LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g2357	ATGCCTTCTTCTTCTTCCTTTCTGTTTCTCTTCCTCTGTTTTTTCTTCTTACCTTCCGCACCTTCCGACCCGAGAGCCCAGCGAGCCGCGCTGCTGTGCACGAACCGCACCGTTTTATCCCTCTCCCGGCGCCAAGTCTTCGTCGCGAACTTCCTGGCCGCGATGGACGCGCTGACCCCTCTCACCACCTCGCACGGCCACGGCGCCGTCTTTAACGGCTCCCAAAACGCCACCGTTTTCGCTTTCGGCGAGTGCATGAGGGACCTCTCGCAGAACGACTGCAACCTGTGCCTGGCGCAGTGCAAGACGCAGCTCCTCGCCTGCCTCCCCTTCCAGAGAGGCACACGTGGCGGCCGCTTGTTCTTCGATGGCTGCTACCTCAGGTACGATGACTACAACTTCTTCGGCGAAACTCGAAGCGACCAAGACACCACCGTGTGTGGAAATAATAGTAGTAACAACAATTCTAACAGTGCTGCAAATAGTGCTACTAACAGTAGTAGCGGTGTTTATAAGGCAAATGCTATGGCCTTGGTTCGGAACCTGAGTGGGTTGGCGCCGAAGAACGATGGTTTTTTCGTTGGGTCGGTGGAGAGAAAGAACGTGAGTGTCTATGGATTGGCTCAGTGCTGGGAGTTTGTGAATGGCAGTGCTTGTGAGAGATGTTTAGCGGATGCTGTCACGAGGATTGGTTCGTGTTCGACGCAAGAAGCGAGGGCGTTGAGTGCTGGTTGTTACTTGAGGTACTCTTCTCAGAAGTTTTATAACAATTCTAGCGATGTTGTAACCGCTGGAAAACATGGAAAACGTACTCTAGTTAAAATTCTGGCTGCGTCTTCTGCTGCCCTGGCTCTTCTGCTAGTTGTTGTGACAGTTGTTTTCTTTACAAGGAAGAATGTGGTGACAAGGAGAAGAGAAAGAAGACAGTTTGGCGCTCTTCTAGCCACAGTGAATAAGTCCAAGCTAAATATGCCTTACGAGGTTCTTGAAAAAGCAACAAATTACTTCAATGAGGCCAACAAGCTTGGACAAGGGGGATCAGGTTCTGTTTATAAAGGAGTTATGCCAGATGGAAATACTGTTGCCATAAAAAGGCTTAGCTATAACACAACACAATGGGCAGAGCATTTCTTCACTGAGGTCAATTTGATCAGTGGCATTCATCACAAAAATCTAGTGAAACTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTGCCTAACCAGAGCCTCCATGATCACTTTTCTGTTAGAAGGACTTCTCAACCGCTGACTTGGGAAATGAGGCAGAAAATTATATTAGGAATTGCAGAGGGCATGGCCTACCTTCATGAGGAATCTCATGTGAGAATCATTCATAGAGACATAAAATTAAGCAACATTCTGCTTGAGGAGGACTTCACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGACAAGTCTCACATTAGCACAGCCATTGCTGGCACACTGGGGTATATGGCTCCGGAGTATATTGTTCGTGGGAAGTTGACTGAGAAAGCAGATGTTTACAGTTTTGGAGTTCTTGTTATTGAAATAGTTTCTGGCAAGAAAATCAGTTCCTATATTATGAATTCATCCTCTCTCCTACAAACGGTTTGGAGCCTCTATGGATCAAATAGGCTATATGAAGTCGTTGATCCGACCCTAGAGGGTGCTTTTCCTGCAGAGGAAGCATGCCAACTGCTTCAGATAGGGTTGCTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGTAGTAGTTAAAATGGTTAATAACAATCACGAAATTCCTCAGCCAGCACAACCGCCTTTCATCAATTCCAGTAGTTCAGAATTCAGCAAATCTGGTTTACCTGGATATAATTTTCAGCCTGGATCCAACACTCAGTCTTCAGGGAACACCATAAGTGAAAGTCAGATTGAGCCTAGATAA	1974	0.465	MPSSSSFLFLFLCFFFLPSAPSDPRAQRAALLCTNRTVLSLSRRQVFVANFLAAMDALTPLTTSHGHGAVFNGSQNATVFAFGECMRDLSQNDCNLCLAQCKTQLLACLPFQRGTRGGRLFFDGCYLRYDDYNFFGETRSDQDTTVCGNNSSNNNSNSAANSATNSSSGVYKANAMALVRNLSGLAPKNDGFFVGSVERKNVSVYGLAQCWEFVNGSACERCLADAVTRIGSCSTQEARALSAGCYLRYSSQKFYNNSSDVVTAGKHGKRTLVKILAASSAALALLLVVVTVVFFTRKNVVTRRRERRQFGALLATVNKSKLNMPYEVLEKATNYFNEANKLGQGGSGSVYKGVMPDGNTVAIKRLSYNTTQWAEHFFTEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHFSVRRTSQPLTWEMRQKIILGIAEGMAYLHEESHVRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYIVRGKLTEKADVYSFGVLVIEIVSGKKISSYIMNSSSLLQTVWSLYGSNRLYEVVDPTLEGAFPAEEACQLLQIGLLCAQASAELRPSMSVVVKMVNNNHEIPQPAQPPFINSSSSEFSKSGLPGYNFQPGSNTQSSGNTISESQIEPR*	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g2357	657	CDD	STKc_IRAK	342	606	-	-
	Gso8g2357	657	ProSiteProfiles	Gnk2-homologous domain profile.	26	134	IPR002902	-
	Gso8g2357	657	Gene3D	-	29	134	IPR038408	-
	Gso8g2357	657	Gene3D	-	150	254	IPR038408	-
	Gso8g2357	657	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Gso8g2357	657	SMART	serkin_6	336	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso8g2357	657	ProSiteProfiles	Protein kinase domain profile.	336	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso8g2357	657	SUPERFAMILY	Protein kinase-like (PK-like)	323	627	IPR011009	-
	Gso8g2357	657	Pfam	Protein kinase domain	337	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso8g2357	657	Gene3D	Transferase(Phosphotransferase) domain 1	412	615	-	-
	Gso8g2357	657	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524
	Gso8g2357	657	ProSiteProfiles	Gnk2-homologous domain profile.	153	254	IPR002902	-
	Gso8g2357	657	Pfam	Salt stress response/antifungal	163	251	IPR002902	-
	Gso8g2357	657	Pfam	Salt stress response/antifungal	42	132	IPR002902	-
	Gso8g2357	657	Gene3D	Phosphorylase Kinase; domain 1	296	411	-	-
	Gso8g2357	657	MobiDBLite	consensus disorder prediction	612	657	-	-
	Gso8g2357	657	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	17	643	-	-
	Gso8g2357	657	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	17	643	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g2357	Gso-Chr8	39543965	39548640	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso8g2357	22	501	Receptor kinase-like Gene Family	AT1G70530	59.252	0.0	592

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso8g2357		Pkinase	1.2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g2357	-		-	gmx:100305402	1209.13