Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2350 ATGTATTCCACTTCCCTCCTTCACCAGGGGAGTTTCTACTTCACAACTATGATTTCATTCACTAATCTTCTTTCTCTTCTTTTCCCTTTGTTCACAACTTCTTTTGTTAGAGTTTTTGCCTCTGAGGTCTCAATCAAAACAACAAATTTGTCACCTTTAAATTGCTCTTCCAAGATCAGAACATGTAATGCCTCACTCTACCACATATCCCAAAATCTCACAATTGAACAAATAGCCTCCTTTTACTCAGTTATTTCTTCCCAAATCACACCTATAATGCATGGCATCAAACAAGACTACCTCATCAGGGTACCTTGTTCATGCAAAAACACAAGTGGCCTTAGCGGATACTTTTATGACACAACCTACAAAGTGAGGCCAAATGACACTTTTGCAAATATTTCAAACCTGATTTTCAGTGGCCAAGTTTGGCCGGTTAATCATACATTGCAACCAAATGAGACTTTAGCAATACACATTCCATGTGGATGTTCAGAAAGTAAGTCTCAAGTAGTTGTTACCTACACGGTCCAGCCGAACGATACACCGATGATGATTGCTAATCTGCTAAATTCTACACTGGCTGACATGCAGAACATGAACAAGGTTCTGGCTCCGAACATCGAATTCATCGATGTTGGTTGGGTGCTATTTGTCCCTAAGGAATCCAAAGGGCTACTACTACTACCTAGTGCTACTAGTACTAATATTGAAGAAAAGAAACATAATAAGTGGACAACAATAATCATTGGCATCTTAGGGGGCATGACATTGCTTTCAATTGTTACAACGATCATTCTCATTCTCAGGAGAAATAAAGTCGACAAAATCAGCATAGAAGATTCACGCCTTATTTCTGGAAGATCAATTGCCAATAAAACTATTTCCTCAAAGTATAGTCTTCATAAGGAATTTGTGGAAGATTTAATTTCATTTGAATCAGAAAGACCATTGATATATAACCTTGAGGACATTGAAGAGGCTACAAATAACTTTGATGAAAGTCGTAAAATAGGAAGTGGTGGATATGGAAGTGTTTATTTTGGAATCTTAGGGAACAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAATAAATCTAAAGAGTTCTATGCTGAACTCAAGGTCTTGTGTAAAATCCACCATATCAACATTGTGGAGCTGTTGGGATATGCCAACGGAGAAGATTATCTCTATTTAGTGTATGAGTATGTTCCAAATGGATCTCTCAGTGATCATCTTCATAATCCATTACTGAAAGGGAACCAGCCTCTTTCTTGGAGTGCTAGGGTTCAAATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGATTATACAAAAGCACGATATGTGCATCGTGATATAAAGACTAGCAATATTCTACTTGATAACAAGTTCAGAGCAAAGGTGGGAGATTTTGGACTTGCAAAGCTGGTAGATAGAACAGATGATGAAAATTTTATAGCAACTAGGCTTGTAGGAACACCAGGCTACCTTCCACCAGAATCTCTGAAGGAGCTTCAAGTGACCCCGAAAACCGATGTGTTTGCATTTGGAGTGGTGCTTTCAGAGCTGTTAACAGGAAAACGTGCACTTTTTCGAGAAAGCCACGAAGACATCAAAATGAAATCACTTATTACTGTTGTTAATGAAATATTCCAAGATGATGACCCAGAGACTGCTATAGAAGATGCCATAGATAAGAATCTTGAAGCTAGCTATCCGATGGAAGATGTCTACAAGATGACAGAAATAGCTGAGTGGTGCTTGCAAGAAGATCCAATGGAAAGGCCTGAAATGAGGGATATCATTGGGGCATTGTCACAGATTGTGATGTCCTCGACAGAGTGGGAAGCATCCCTATGTGGAAACAGCCAGGTCTTTAGTGGGTTATTTAGTGGAAGATGA 1911 0.3898 MYSTSLLHQGSFYFTTMISFTNLLSLLFPLFTTSFVRVFASEVSIKTTNLSPLNCSSKIRTCNASLYHISQNLTIEQIASFYSVISSQITPIMHGIKQDYLIRVPCSCKNTSGLSGYFYDTTYKVRPNDTFANISNLIFSGQVWPVNHTLQPNETLAIHIPCGCSESKSQVVVTYTVQPNDTPMMIANLLNSTLADMQNMNKVLAPNIEFIDVGWVLFVPKESKGLLLLPSATSTNIEEKKHNKWTTIIIGILGGMTLLSIVTTIILILRRNKVDKISIEDSRLISGRSIANKTISSKYSLHKEFVEDLISFESERPLIYNLEDIEEATNNFDESRKIGSGGYGSVYFGILGNKEVAVKKMRSNKSKEFYAELKVLCKIHHINIVELLGYANGEDYLYLVYEYVPNGSLSDHLHNPLLKGNQPLSWSARVQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDNKFRAKVGDFGLAKLVDRTDDENFIATRLVGTPGYLPPESLKELQVTPKTDVFAFGVVLSELLTGKRALFRESHEDIKMKSLITVVNEIFQDDDPETAIEDAIDKNLEASYPMEDVYKMTEIAEWCLQEDPMERPEMRDIIGALSQIVMSSTEWEASLCGNSQVFSGLFSGR* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2350 636 Gene3D Phosphorylase Kinase; domain 1 311 403 - -
Gso8g2350 636 SUPERFAMILY Protein kinase-like (PK-like) 315 608 IPR011009 -
Gso8g2350 636 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 31 636 - -
Gso8g2350 636 Gene3D LysM domain 164 225 IPR036779 -
Gso8g2350 636 SUPERFAMILY LysM domain 173 220 IPR036779 -
Gso8g2350 636 Pfam LysM domain 175 220 IPR018392 -
Gso8g2350 636 Pfam Protein kinase domain 333 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2350 636 ProSiteProfiles Protein kinase domain profile. 332 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2350 636 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 31 636 IPR044812 GO:0019199|GO:0045087
Gso8g2350 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Gso8g2350 636 Gene3D Transferase(Phosphotransferase) domain 1 404 626 - -
Gso8g2350 636 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Gso8g2350 636 SMART serkin_6 332 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2350 Gso-Chr8 39304177 39310252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2350 312 636 Receptor kinase-like Gene Family AT1G51940 51.360 7.75e-114 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gso8g2350 Pkinase 1.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2350 - - gmx:100791718 1194.87