Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2341 ATGGGTCGTCGTAAGATTGAAATTGCGGAGGTGAAAGACCCTAATACGAGGCAAGTCACATTTTCCAAGCGTCGATCAGGCTTATTCAAAAAGGCAAATGAATTGTCCATCTTGTGCGGAGTAGAAATTGCTATGGTTGTGTTCTCTATTGGAAACAAACCTTATTCTTTTGGGCACCCAAGTGTTGATGTTGTTGCAACCAAGTTTCTTCAACAAGCGACAACCAATTCAAATGATGATGCACAGGGAAAAAATAACAACAACCCTAATTCGAATGAAGTTGTTGATGGTGACAACATGGAAAGGTTGAATCAACAATTGTCTAATCTTCAGGCCCAAATACTAGAGGAAGAAAAGAAGGGTGCGAGGCATGATGAGAGACTAAAACAACATGAAGTGACACAAGTCTCTCAATATGCAGAATTGCAAGGTTCTTGTTTAGAGCTCCAACGTAAGGTGAAGGACAATGTTGACGCAATCGAGGTATCAGAGTATTCAGATGAGGATTCATCCATTATGGGCTATACTTTTGTAAGAGGAACAAGTGTGTCTGAGTGCTTGGCTGATTATGGGGTTTTTGAAGGGGGTGATTTGGAAATTGTAACACCTGAGAGAATCACACTAGAAAGAGAGAAATCCATAGGTTATGCAGGCATTAGACTATACAGTTGA 672 0.4048 MGRRKIEIAEVKDPNTRQVTFSKRRSGLFKKANELSILCGVEIAMVVFSIGNKPYSFGHPSVDVVATKFLQQATTNSNDDAQGKNNNNPNSNEVVDGDNMERLNQQLSNLQAQILEEEKKGARHDERLKQHEVTQVSQYAELQGSCLELQRKVKDNVDAIEVSEYSDEDSSIMGYTFVRGTSVSECLADYGVFEGGDLEIVTPERITLEREKSIGYAGIRLYS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2341 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso8g2341 223 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Gso8g2341 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 164 - -
Gso8g2341 223 Coils Coil 100 120 - -
Gso8g2341 223 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Gso8g2341 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gso8g2341 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso8g2341 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso8g2341 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso8g2341 223 MobiDBLite consensus disorder prediction 76 96 - -
Gso8g2341 223 PANTHER MADS BOX PROTEIN 2 164 - -
Gso8g2341 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2341 Gso-Chr8 39120941 39123639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2341 1 128 Type I MADS-box Gene Family AT2G34440 42.969 5.89e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso8g2341 SRF-TF 2.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2341 - - gsj:114424164 435.647