Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2336 ATGGAAGAAGCACTCCGTCGTCTCAACGGAATGGGCCCCACTCAAGACCCCGACACAACCCTCTCCGACCACCACCCCAAGAAAAGCGCCACCACCAAGCGCGGGCTGCGCGATACCGCCAGCTCCGGCGGCACCATGCGCTATCGCGGCGTCCGACGCCGCCCCTGGGGCCGCTACGCTGCCGAGATCCGCGACCCGCAGTCGAAGGAACGGCGTTGGCTTGGCACCTTCGACACGGCGGAGGAGGCCGCCTTCGCATACGACTGCGCCGCCCGCGCCATGCGCGGCGCCAAGGCCCGCACCAACTTCTTATACCCCGACGCCGCCGACCCTAACCACCACCACCTCTTCCAACCCTACAACATCAACCCCAAACACTGCCATGTCACCAGGTTCGTCCCGAACCAAAATTTAAACGCTGACTTCTCCGCAAATTCCCACAACAACAACAATAACAACGTTTCTTCTTCTCTTAACATGGTTCTCTTTCGTGACTTTCTCAACTCTTCTTCTCACCACTTTCATAATAATAATAATAAGTCTTCTAGTTGTTATGTAAACTCTTCATCTTCTTCTTCTGCTGCAAATAACTGTCTCCAAGGTTGTTGCTTTACCAACCCTAATCTTGGAATGGAAGTTGCTGAAGCTATTAATGAAGAATCTGACTTTTTCCCAATAGAGTCTTCGGATTCTGGGTTGTTGGAGGAGATTGTCCACAAGTTCTTGCCAAAATCGAAGCCCAAGAAAGAAACTTTGTCTGTTCCTGAGTCACGTCCTCCTCAACAGAAATTTGAACTCAAGAATGTTTCTGCTGCAAGGGGTTGTGCTGATACTAGGACTAGGGTTCCGAAGGTTGAAGCTTTTGGTGCCCCTTATGATTCTTCTACCATGCAGCACCAATTTGAAGCCATTCATCATGGCTTCAACACCATGCAGGGCGTGTCTGTGGAGAGAAACAACCAGTTTTTGATGAACCATGTTGCTGCAGGATGCTCCAACCTGGAAGATTTTCTTCAGTATCCAGAGATTTTTAATTCCCTTGTAGCAAGGATGCAAAATGCTTAG 1065 0.5052 MEEALRRLNGMGPTQDPDTTLSDHHPKKSATTKRGLRDTASSGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAAFAYDCAARAMRGAKARTNFLYPDAADPNHHHLFQPYNINPKHCHVTRFVPNQNLNADFSANSHNNNNNNVSSSLNMVLFRDFLNSSSHHFHNNNNKSSSCYVNSSSSSSAANNCLQGCCFTNPNLGMEVAEAINEESDFFPIESSDSGLLEEIVHKFLPKSKPKKETLSVPESRPPQQKFELKNVSAARGCADTRTRVPKVEAFGAPYDSSTMQHQFEAIHHGFNTMQGVSVERNNQFLMNHVAAGCSNLEDFLQYPEIFNSLVARMQNA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2336 354 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Gso8g2336 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 208 - -
Gso8g2336 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 215 354 - -
Gso8g2336 354 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Gso8g2336 354 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Gso8g2336 354 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Gso8g2336 354 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Gso8g2336 354 MobiDBLite consensus disorder prediction 1 49 - -
Gso8g2336 354 MobiDBLite consensus disorder prediction 20 34 - -
Gso8g2336 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 208 - -
Gso8g2336 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 215 354 - -
Gso8g2336 354 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Gso8g2336 354 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Gso8g2336 354 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2336 Gso-Chr8 39056487 39057663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2336 1 255 AP2-EREBP Transcription Factor Family AT1G24590 38.596 1.28e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g2336 AP2 8.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2336 - - gmx:102665767 630.172