Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2328 ATGGAATTTCAGAAGCATCATGAGGAAGCTGAGCTTGGGCTGCCCACAGCAGTAGCAGCAACGAACTATGAAGAGTTTGGAATGCCACTGAATCACGACGAACAAGAGCCAGTGGTGGAAGTGATACCAATGGCGGTGCCAATGGCGGTTCCAGTGGCACCACCCACCAACATTGTGGCCCAAAACAGTGGCAAGGGAAAGTACCAAGAATGCCTCAAGAACCACGCTGTCTCAATCGGCAAACACATTATCGACGGATGCATCGAGTTCCTGCCGGGGGGTGAGGAGGGCACCCTGGAAGCGCTAAAATGCGTTGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCACGACACCTACTCAGTGCCCTTCCACCACCACCACCCACCGCTGCCACCCCCAGTGCCATTTGCAGCTTACTATCATACCCCGCCGGGGTACCCACACATGACGGGGCACCAACGTGCCATGCTGGCACACCCGTCCTTGTCAGGAGGAGGTGGGCCCCAGCCCCCCTTGGAAGACCTGGAGGACTCAGACCCTACGAGTGGTGCCACCACTCATGATGGGTCTGGGTCGAGCAGCAAAAAACGCTTCAGGACCAAATTTACCCAGCATCAGAAAGACAAGATGTTGGTCTTCGCTGAGAAACTCGGGTGGAGGATGCAAAAGAATGATGACAGCGTCGTGCAAGAGTTTTGCTCCGAAATCGGTGTTCAACGTCATGTGCTAAAGGTGTGGATGCATAATAACAAGCACACCTTAGGTAAGAAGCCCTAG 786 0.5433 MEFQKHHEEAELGLPTAVAATNYEEFGMPLNHDEQEPVVEVIPMAVPMAVPVAPPTNIVAQNSGKGKYQECLKNHAVSIGKHIIDGCIEFLPGGEEGTLEALKCVVCNCHRNFHRKETHDTYSVPFHHHHPPLPPPVPFAAYYHTPPGYPHMTGHQRAMLAHPSLSGGGGPQPPLEDLEDSDPTSGATTHDGSGSSSKKRFRTKFTQHQKDKMLVFAEKLGWRMQKNDDSVVQEFCSEIGVQRHVLKVWMHNNKHTLGKKP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2328 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 55 260 - -
Gso8g2328 261 SUPERFAMILY Homeodomain-like 184 259 IPR009057 -
Gso8g2328 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 260 - -
Gso8g2328 261 MobiDBLite consensus disorder prediction 161 205 - -
Gso8g2328 261 Gene3D - 184 258 - -
Gso8g2328 261 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 198 254 IPR006455 -
Gso8g2328 261 Pfam ZF-HD protein dimerisation region 67 118 IPR006456 -
Gso8g2328 261 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Gso8g2328 261 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 67 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2328 Gso-Chr8 38700401 38701744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2328 64 257 ZF-HD Transcription Factor Family AT4G24660 52.500 4.74e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso8g2328 ZF-HD_dimer 5.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2328 - - gmx:100781241 484.952