Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2325 ATGGCGGTTCCAGTGGCACCACCCACCAACATTGTGGCCCAAAACAGTGGCAAGGGAAAGTACCAAGAATGCCTCAAGAACCACGCTGTCTCAATTGGCAAACACGTTATCGACGGCTGCATCGAGTTCCTGCCGGGGGGTAAGGAGGGCACCCTGGACGTGCTAAAATGTGTTGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCACGACACCTACTCAGTGCCCTTCCACCACCACCACCCACCGCTGCCACCCCCAGTTCCATTTGCAACATACTATCGTGCCCCACCGGGGTACCTACACATGGCGGGGCACCAACGTGCCATGCTGGCACACCCGTCCTTGTCAGGAGGAGGTGGGGCCCAGCCTCCCTTGGAAGACCTGGAGGACTCGGACCCTACTAGTGGTGCCACCACTCATGATGGGTCTGGGTCGAGCAGCAAAAAACGCTTCAGGACCAAATTTACCCAGCATAAAAAAGACAAGATGTTGGTCTTCGCTGAGAAACTCAGGTGGAGGATGCAAAAGAATGATGAGAGCGTTGTGCAAGAGTTTTTCTCCGAAAATGGTGTTCAACGTCATGTGCTAAAGGTGTGGATGCATAATAACAAGCACACCTTAGGTAAGAAGCCCTAG 645 0.538 MAVPVAPPTNIVAQNSGKGKYQECLKNHAVSIGKHVIDGCIEFLPGGKEGTLDVLKCVVCNCHRNFHRKETHDTYSVPFHHHHPPLPPPVPFATYYRAPPGYLHMAGHQRAMLAHPSLSGGGGAQPPLEDLEDSDPTSGATTHDGSGSSSKKRFRTKFTQHKKDKMLVFAEKLRWRMQKNDESVVQEFFSENGVQRHVLKVWMHNNKHTLGKKP* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2325 214 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 151 207 IPR006455 -
Gso8g2325 214 MobiDBLite consensus disorder prediction 114 157 - -
Gso8g2325 214 Gene3D - 137 212 - -
Gso8g2325 214 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 12 213 - -
Gso8g2325 214 Pfam ZF-HD protein dimerisation region 20 71 IPR006456 -
Gso8g2325 214 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 70 IPR006456 -
Gso8g2325 214 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 213 - -
Gso8g2325 214 SUPERFAMILY Homeodomain-like 137 212 IPR009057 -
Gso8g2325 214 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2325 Gso-Chr8 38631592 38632444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2325 17 210 ZF-HD Transcription Factor Family AT4G24660 48.500 3.52e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso8g2325 ZF-HD_dimer 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2325 - - gmx:100781241 404.445