Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2324 ATGGAACTTCAGGAGAATCATGAGGAAGCTGAGCTTGGGCTGCCCACAGCAGTAGCAGCAACGAGCTATGAAGAGTTTGGAATGCCACCGAATCATGACGAACAAGAGCCAGTGGTGGAAGTGGTGCCAATGTGGCAAGTGAAAGTACCAAGATGCCTCAAGAACCACGCTGTCTCAATCGTTGGGCACGCTATCGACGGCTGCATTGAGTTCCTACCGGGGGGTGAGGAGGGCACCCTGGACGCGCTAAAATGTGCTGCGTGCAACTGCCATCGAAACCTCCACCGTAAGGAGACCCACGACACCTACTCAGTGCCCTTCCACCACCACCACCACCCACTGCTGCCACCCCCAGTGCCATTAGCAGCTTACTATCGTGCCCTGCCGGGGTACCTACACATGACGGGGCACCAATGTGCCATGCTAGCACACCCGTCCTTGTCGGGAAGAGGTGGGCCCCAGCCCCCCTGGGAAGACCTGGAGGACTCAGACCCTACGAGTGGTGCCACCACTCATGATGGGTCTGGGTCGAGCAGCAAAAAGCGCTTCAGGACCAAATTTACCCAGCATCAGAAAGACAAGATGTTGGTCTTCGCTGAGAAACTCGGGTGGAGGATGCAAAAGAACGATGAGAGCATCGTGCAAGAGTTTTGCTCCGAAATCGGTGTTCAACGTCATTTGCTAAAGGTGTGGATGCATAATAACAAGCACATCTTAGGTAAGAAGCCCTAG 732 0.5464 MELQENHEEAELGLPTAVAATSYEEFGMPPNHDEQEPVVEVVPMWQVKVPRCLKNHAVSIVGHAIDGCIEFLPGGEEGTLDALKCAACNCHRNLHRKETHDTYSVPFHHHHHPLLPPPVPLAAYYRALPGYLHMTGHQCAMLAHPSLSGRGGPQPPWEDLEDSDPTSGATTHDGSGSSSKKRFRTKFTQHQKDKMLVFAEKLGWRMQKNDESIVQEFCSEIGVQRHLLKVWMHNNKHILGKKP* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2324 243 MobiDBLite consensus disorder prediction 145 186 - -
Gso8g2324 243 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 51 98 IPR006456 -
Gso8g2324 243 Pfam ZF-HD protein dimerisation region 51 99 IPR006456 -
Gso8g2324 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 98 IPR006456 -
Gso8g2324 243 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 180 236 IPR006455 -
Gso8g2324 243 Gene3D - 166 240 - -
Gso8g2324 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 40 242 - -
Gso8g2324 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 242 - -
Gso8g2324 243 SUPERFAMILY Homeodomain-like 166 240 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2324 Gso-Chr8 38594549 38595375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2324 46 239 ZF-HD Transcription Factor Family AT4G24660 51.000 1.93e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso8g2324 ZF-HD_dimer 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2324 - - gmx:100781241 396.741