Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2309 ATGGCTGGTGCCACGAATTGGCTTACGTTTTCGTTGACTCACATGGAAATGCAGCAGTTCGGTCCATACGACACCACCACTCACTCTCACTGCTTCAACGACAGCAATTTTTATGGGTGGACGAATTCTAAGAGCGTCATGGATTCACAGAGTGAGACCCAACAACTTGCGGTGCCAAAAATGGAAGATTTTTACTTCGGTGATCACCAGCAAGATCTGAAGGCGATGATTGTTCCTGGGTTCAAAGCGTTGTCTGGGACCAACTCGGGGTCCGAGGTGGATGACTCGACCTCCAACAAGACGGTGACTCGGGTTGCACCCGCTGCGTTGGGCGGTGCTCACTCTGGCGAATCTAATTGTAAAGGATCAGCTTTGACTTTATGCGATGTTGCTGCGAATGGTTCTGATGATAGTAATAATAAGGCCGTTGTTGCCGTGGGGTTTGATACTCGGAAGAAGGTTGCTCATACGTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACAAGGCACCGATGGACGGGAAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGCGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTACTTGGGTGGATATGACAAGGAAGATAAGGCTGCGAGGGCTTATGATTTAGCAGCTCTAAAGTACTGGGGACCAACAGCCACGACTAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGGAACATGCAGGAAGGCAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGTGGTTTTTCAAGGGGAGCTTCTGCTTACAGAGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCTTATGACATTGCAGCCATAAAGTTCAGAGGTTCGAGCGCCGTAACCAATTTCGAGATGAGTCGATATGACGTCGACACTATATTGAACAACTCGCTTCCAGTTGGTGGCGTAGCAAAGCGCTTGAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTATCAGCACCATTATTCAACCACCTCAGAACACAAACGCAAGTAGCAGCATCAATTTCTCAGCCATTCAGCCAGTTTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACTTCTTCCACCACCATTTCAATCCTACCAACGGTGGAACTAGCTCATCAGATTCTGCTGCTGCTGCAGCAGTGACCGATGCGATTGCACTCAATACCCTTCCACCACCAGCAGTTCCTGGGTTCTTCATATGGCCTCACCAGTCCTACTGA 1344 0.4821 MAGATNWLTFSLTHMEMQQFGPYDTTTHSHCFNDSNFYGWTNSKSVMDSQSETQQLAVPKMEDFYFGDHQQDLKAMIVPGFKALSGTNSGSEVDDSTSNKTVTRVAPAALGGAHSGESNCKGSALTLCDVAANGSDDSNNKAVVAVGFDTRKKVAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPTATTNFPISNYTKELEEMEHAGRQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGSSAVTNFEMSRYDVDTILNNSLPVGGVAKRLKVSPETENKALISTIIQPPQNTNASSSINFSAIQPVSSIPYDSAITCYPHNFFHHHFNPTNGGTSSSDSAAAAAVTDAIALNTLPPPAVPGFFIWPHQSY* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2309 447 Gene3D AP2/ERF domain 164 232 IPR036955 GO:0003700|GO:0006355
Gso8g2309 447 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
Gso8g2309 447 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 SUPERFAMILY DNA-binding domain 163 232 IPR016177 GO:0003677
Gso8g2309 447 SUPERFAMILY DNA-binding domain 265 326 IPR016177 GO:0003677
Gso8g2309 447 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 444 - -
Gso8g2309 447 SMART rav1_2 164 236 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 68 444 - -
Gso8g2309 447 CDD AP2 163 232 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 Pfam AP2 domain 266 316 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 Pfam AP2 domain 164 222 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 ProSiteProfiles AP2/ERF domain profile. 164 230 IPR001471 GO:0003700|GO:0006355
Gso8g2309 447 CDD AP2 265 326 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2309 Gso-Chr8 38087371 38093668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2309 65 447 AP2-EREBP Transcription Factor Family AT5G65510 54.878 2.52e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso8g2309 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2309 K09285 - gmx:100814405 874.004