Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2285 ATGGAAAATGGCATCATTCGGGTCAGTTTGTCAAAACCGGAGGGCACTGTCCTAGGAATATCATACAATGGAATAGATAATGTGCTTGAACGTCGCAACAAATTTAATAATAGAGGGTATTTTGACATTGTCTGGAATGCACCGGGAAGCACTTCCAAACTTTGGGGAATCCAAGGGAGTAAATTTTCTGTTATAGAAGCAAGTGAGAACCAAGTAGAGGTTTCGTTTACAAGAACGTGGGACATGGACAGCTCAAGTCTCCCCTTAAACATAGACAAAAGGTATATTTTACGTAGAGGTAGTTCAGGATTATACATATACGCTATATTTGAACATCCCAAAGATTTTCCTGCACTGGAGATAGATCACATTAGGATCGTTTTCAAGCTACAAAGGGACAGGTTCCACTACATGGCCATAGCAGATGATAGGCAACGAGTCATGCCAACGGCAGAAGATAGATCTAAAGGGAGACGCCTTGATTTTGATGAAGCAGTTCTAATAACCAACCCTAGTAATCCAGAACTTCAAGGAGAGGTTGATGACAAATACCAATATTCTTGTGAGAACAAAGACAATAAAGTTCATGGGTGGATTAACTTGGACTCCAATTCCAATGAATCTGTGGGCTTCTGGATGATAACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAAGCAAGGCCTCACTTCTCATGTCGGGCCAACCACACTCAATATACTTCATACCACTCATTACTCGGGGAAGGAGGTAACCATGGCATTAAAAGAAGGGGAACCCTTCAAGAAAGTTTATGGCCCTGTTTTTGCTTATCTGAACTCAGTTTCTAGTGGCCATGATTCACAAGCCCTATGGAGTGATGCTGTACAACAGCTGTCTGAGGAAATCAAAAGTTGGCCTTATGATTTCCCTAATTCAGAAGAATTTTTCCCAGCCAATAAACGAGGAAGGGTGGAAGGAAGATTACTAGTCCAAGACCGGCACATTCAGGGAGGGAGTTTTGTATATGGCGACAATGCTTATGTTGGTTTGGCTCTTCCGGGAGATGTGGGTTCATGGCAAAGACAAAGCAAGGGTTACCAATTTTGGACTGAAGCTGACAAAGTAGGTCAATTCACAATTGAAAATATTCTACCGGGGGACTATGATTTATATGCATGGGTTCCTGGCATTTTTGGGGACTATAAACATAACACTACTATAACCATCACACCAGGTTGTGTTATCCAATTGGGTTCACTAATATACCATCCACCAAGAAATGGACCTACCATATGGGAAATTGGCATTCCAGATCGCTCTGCTGCGGAGTTCTATGTTCCAGATCCTTATCCTAACCTCATCAACCGATTATACATTGGGAAACCAGCACACAAGTTTAGACAATACGGATTATGGCAGCGTTATACCGAGTTATACCCAAGTCAGGACCTCGTTTATAATGTTGATGTCAGTAATTATAGTAAAGATTGGTTTTATGCTCAGATTCCCAGGAACATAGGAAACAACACATTTAGCCCAACAACATGGGAGATTAAATTCCATCTCCCATTTGTTATAAGAGGCACCTACACACTGCAACTTGCCTTGGCCTCAGCTACTCGTTCTAACTTGGTGGTTCGGCTCAATAACCCTGTGGCTCGTCCTCCACACTTCTCAACGGGATTAATAGGCCGAGACAATTCCGTAGCAAGACATGGCATCCATGGATTGCACAGGCCTTACAGCATTGAAGTACCAAGCTATCTATTGGTGGAAGGAACCAACACCATCTATTTGAGGCAATCAAAAGGTCTAAGTCCTTTCCTAGGAGTTATGTATGACTACATCCGTTTGGAAAGACCTGAAACTTAG 1857 0.4233 MENGIIRVSLSKPEGTVLGISYNGIDNVLERRNKFNNRGYFDIVWNAPGSTSKLWGIQGSKFSVIEASENQVEVSFTRTWDMDSSSLPLNIDKRYILRRGSSGLYIYAIFEHPKDFPALEIDHIRIVFKLQRDRFHYMAIADDRQRVMPTAEDRSKGRRLDFDEAVLITNPSNPELQGEVDDKYQYSCENKDNKVHGWINLDSNSNESVGFWMITPSNEFRSGGPIKQGLTSHVGPTTLNILHTTHYSGKEVTMALKEGEPFKKVYGPVFAYLNSVSSGHDSQALWSDAVQQLSEEIKSWPYDFPNSEEFFPANKRGRVEGRLLVQDRHIQGGSFVYGDNAYVGLALPGDVGSWQRQSKGYQFWTEADKVGQFTIENILPGDYDLYAWVPGIFGDYKHNTTITITPGCVIQLGSLIYHPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLINRLYIGKPAHKFRQYGLWQRYTELYPSQDLVYNVDVSNYSKDWFYAQIPRNIGNNTFSPTTWEIKFHLPFVIRGTYTLQLALASATRSNLVVRLNNPVARPPHFSTGLIGRDNSVARHGIHGLHRPYSIEVPSYLLVEGTNTIYLRQSKGLSPFLGVMYDYIRLERPET* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2285 618 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 617 - -
Gso8g2285 618 Pfam Polysaccharide lyase family 4, domain II 339 411 IPR029413 -
Gso8g2285 618 Gene3D - 311 412 - -
Gso8g2285 618 Pfam Rhamnogalacturonate lyase family 1 180 IPR010325 -
Gso8g2285 618 Gene3D - 2 288 IPR014718 GO:0030246
Gso8g2285 618 SUPERFAMILY Starch-binding domain-like 311 413 IPR013784 GO:0030246
Gso8g2285 618 CDD RGL4_M 315 415 IPR029413 -
Gso8g2285 618 SUPERFAMILY Galactose mutarotase-like 6 277 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gso8g2285 618 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 617 - -
Gso8g2285 618 SUPERFAMILY Galactose-binding domain-like 422 614 IPR008979 -
Gso8g2285 618 Gene3D - 422 614 - -
Gso8g2285 618 CDD RGL4_C 427 614 - -
Gso8g2285 618 Pfam Polysaccharide lyase family 4, domain III 425 613 IPR029411 -
Gso8g2285 618 CDD RGL4_N 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2285 Gso-Chr8 36985624 36991142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2285 1 616 Polysaccharide Lyase AT1G09910 55.395 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2285 K18195 - gmx:100792575 1283.47