Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2283 ATGAAGGAGAAGGTGGTGGGATGGAGGAGCAAACGGGTTTTTTTCCTTTGGTGGCTTTGTTTCTTGCTCGGTGTCTGTTCTGAGAAGACAACATCAAGAAGAGGTTTAAGGGAGACCCTGGCCAAGAAATCGAGAACTTCTAATTCTGGAGTCATGCTGAATTCTAACAACCGCCAACAGTTGGTGGTTGACAATGGTATTGTCGCGGTTACCTTTTCAAAGCCTGAGGGCAACATACTTGGAATATCATATAACGGAATTCACAATATACTTGAAGATGAAAACGAAGATCAAGATAGAGGGTACTTGGACGTGGTTTGGAATACACCGGGAAAGCCTAGTAATTGTCAGAGAATATACGGGACAAAATTTTCGGTTATAGCAGCTGACGAGAATATGGTCGAGGTTTCATTCTCAAGAACATGGACATCATCCATGAATGACTCAAGTGTCCCCATGAATATTGACATGAGATACATTTTTCGAAATGGTGATTCAGGGTTTTATTCATATGCAATATTTGATCGCCCTGAAGGATTGCCCGCGGCGGAGATTGACCAAATTAGGATTGTATTCAAACTCAAGAAAGACAGGTTTAACTACATGGCTATATCAGATGAAAGGCAGAGAAATATGCCAACGATGAGAGACAGAGAAGCTGGACAAATCCTAGCATTCCCAGAAGCAGTTCTATTAACCAGACCAATCAGCCCAAAATTCAGAGGAGAGGTGGATGATAAATACCAGTACTCATGTGAGAACAAGGACAACAATGTTCATGGGTGGATCAGTGTTGATTCTTCTAATGCACCATCCGTGGGTTTCTGGATGATAACGCCCAGCAACGAGTTTCGCAATGCTGGGCCCATCAAGCAGGACCTTACTTCCCATGTTGGCCCCATCACTCTCGCGATGTTTATGAGTGCTCACTATGCTGGCAAGGAGGTAACCATGGCATTTCAACAAGGAGAGACTTATAAAAAGGTTTTTGGCCCTGTATTCGCCTATTTTAACAATGCTTCAAGAGAGGATGATATACTATCCCTCTGGTCAGATGCTGTGCAGCAGCAATCTAAAGAAGTCACAAGTTGGCCTTACGATTTTCCTAAATCAGTAGATTTCATTCCACCGAATCAAAGGGGAATAGTTTTGGGAAGATTATTAGTCCAAGATAGGTACTTCAGAGTAGGTAAACTTCTATATGCTAACAATGCTTATGTTGGGCTAGCTTTGCCTGGAGATGAAGGATCATGGCAGATAGAAAGCAAGGGTTATCAATTCTGGACTCGAGCTGATACAAAGGGTTTCTTCCTAATAAATAATATTGTGCCAGGTGACTATAATTTTTATGCATGGATTCCTGGCTTCATTGGTGATTACAGATATAATGCTACAATCACCATCACACAAGGTAGAATTTATTCCCTAACCATCTTGTGTGTTAAGGCCAAAATAAGTCATTACTTTGCCCAATTTAACAATTACTTGTTTGAACCTCTAGGAGGAGTCATCAAATTGGATTCACTTGTGTATGTTCCTCCAAGAAATGGACCAACCCTATGGGAAATTGGGTTTCCAGATCGCACGTCTGCAGAATTCTATGTACCAGACCCTTATCCTACGCTCATGAACAAATTATACAACGAAGAGCACAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATACTGATCTATATCCAAATGATGATCTTGTTTACACGGTTGGTGTTAGCAAGTATAGAAAGGATTGGTTTTATGCTCATGTTACGAGAAGCACAGGAAATAAGACATACCAGCCAACCACATGGCAGATTGTATTTGAACATCCAAATCAAATAATAAGAGGAAACTACACATTGCAACTGGCCTTGGCATGTACTGCTGATGCTGACCTTCAGGTTCGGGTCAATAACCCTAGTGCTAATCCACCAGACTTTGCAACGGGGAAAATGGGAGGAGATAGTGCCATAGCAAGGCATGGTGTGCATGGATTATATAGGCTATTCAGCATTAACGTACCAAGTGATCGATTTGTGAAAGGAACCAACACCATCTATCTGAGGCAGTCAAGAGCCATGAACCCTTTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACGACCTCCATTAACACTGATTTAA 2151 0.4161 MKEKVVGWRSKRVFFLWWLCFLLGVCSEKTTSRRGLRETLAKKSRTSNSGVMLNSNNRQQLVVDNGIVAVTFSKPEGNILGISYNGIHNILEDENEDQDRGYLDVVWNTPGKPSNCQRIYGTKFSVIAADENMVEVSFSRTWTSSMNDSSVPMNIDMRYIFRNGDSGFYSYAIFDRPEGLPAAEIDQIRIVFKLKKDRFNYMAISDERQRNMPTMRDREAGQILAFPEAVLLTRPISPKFRGEVDDKYQYSCENKDNNVHGWISVDSSNAPSVGFWMITPSNEFRNAGPIKQDLTSHVGPITLAMFMSAHYAGKEVTMAFQQGETYKKVFGPVFAYFNNASREDDILSLWSDAVQQQSKEVTSWPYDFPKSVDFIPPNQRGIVLGRLLVQDRYFRVGKLLYANNAYVGLALPGDEGSWQIESKGYQFWTRADTKGFFLINNIVPGDYNFYAWIPGFIGDYRYNATITITQGRIYSLTILCVKAKISHYFAQFNNYLFEPLGGVIKLDSLVYVPPRNGPTLWEIGFPDRTSAEFYVPDPYPTLMNKLYNEEHRDKFRQYGLWERYTDLYPNDDLVYTVGVSKYRKDWFYAHVTRSTGNKTYQPTTWQIVFEHPNQIIRGNYTLQLALACTADADLQVRVNNPSANPPDFATGKMGGDSAIARHGVHGLYRLFSINVPSDRFVKGTNTIYLRQSRAMNPFQGVMYDYIRLERPPLTLI* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2283 716 SUPERFAMILY Starch-binding domain-like 377 477 IPR013784 GO:0030246
Gso8g2283 716 SUPERFAMILY Galactose-binding domain-like 516 709 IPR008979 -
Gso8g2283 716 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 501 712 - -
Gso8g2283 716 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 480 - -
Gso8g2283 716 CDD RGL4_M 379 472 IPR029413 -
Gso8g2283 716 Gene3D - 52 354 IPR014718 GO:0030246
Gso8g2283 716 Gene3D - 376 479 - -
Gso8g2283 716 SUPERFAMILY Galactose mutarotase-like 55 342 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gso8g2283 716 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 501 712 - -
Gso8g2283 716 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 480 - -
Gso8g2283 716 CDD RGL4_N 60 346 - -
Gso8g2283 716 Pfam Polysaccharide lyase family 4, domain II 403 472 IPR029413 -
Gso8g2283 716 Gene3D - 517 709 - -
Gso8g2283 716 CDD RGL4_C 521 709 - -
Gso8g2283 716 Pfam Polysaccharide lyase family 4, domain III 519 708 IPR029411 -
Gso8g2283 716 Pfam Rhamnogalacturonate lyase family 49 244 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2283 Gso-Chr8 36936038 36945753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2283 60 711 Polysaccharide Lyase AT1G09890 53.893 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2283 K18195 - gmx:100791732 1399.8