Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2270 ATGGAGCTTTCTCAACTTGGTTTCCTAGAAGAGTTGGTAGCTCCTAGAAGAGACTCATGGAATGCTTTGTCCACTGGATTCTGTGAGCTATTGTCTAATGGCTGTTGTTGGAGTTTTGACACTTTTCTTGAGAACCCAACATTTGGTGCATTTTCAGCTCCAAGATTTGAAAGCCCTTACAGCAGTGAAGTATCAGCAGCATACCCTTTTGCTGCTGATGGGTTCACAATGCCATTGCCAGAGCTTGACCCTGGGAGTGATGAGCCGCCACCACCACCACCACTTCCACCATCATTGGAGGATGCAGAGATTGGCTTTCATGACAACAACAACAAGAAGAAGAACAACTTTGAAGAAACCAAGGTTGTGTGCAAAGTTGAGGAGAAAGACAGAGAGATTCCACTCTTCAAGATTGGCATGTGTGATGATGGAGAGAGAAAACCCAAGTCCAAGAAGCTTGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGATCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGATGGATAGGACCTCTATTCTTGGGGATACCATAGACTACATGAAAGAGCTTTTGGAAAGGATTGGTAAGTTGCAAGAGGAAGAGGGTACAAGTCAGATAAATCTTTTGGGCATTTCAAGGGAACAACTCAAGCCTAATGAAGCAATATTTGATGTTGAGAGGAGAGACCAGGACACCAGGATCAGCATCTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACTGTGAATACCTTAGAAGCAATAGGCCTTGAGATTCAGCAATGTGTTGTAAGTAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTAGCTGAACAGAGAGATTGCATTCATCCTGAAGAGATAAAACAAGCATTATTCAGAAATGCAGGCTTTGGTGAGAAATGTCTCTAG 963 0.4393 MELSQLGFLEELVAPRRDSWNALSTGFCELLSNGCCWSFDTFLENPTFGAFSAPRFESPYSSEVSAAYPFAADGFTMPLPELDPGSDEPPPPPPLPPSLEDAEIGFHDNNNKKKNNFEETKVVCKVEEKDREIPLFKIGMCDDGERKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEGTSQINLLGISREQLKPNEAIFDVERRDQDTRISICCATKPGLLLSTVNTLEAIGLEIQQCVVSSFNDFSVEASCSEVAEQRDCIHPEEIKQALFRNAGFGEKCL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2270 320 Pfam Helix-loop-helix DNA-binding domain 161 204 IPR011598 GO:0046983
Gso8g2270 320 Gene3D - 163 235 IPR036638 GO:0046983
Gso8g2270 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 320 - -
Gso8g2270 320 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 320 - -
Gso8g2270 320 SMART finulus 161 210 IPR011598 GO:0046983
Gso8g2270 320 MobiDBLite consensus disorder prediction 83 99 - -
Gso8g2270 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 220 IPR036638 GO:0046983
Gso8g2270 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Gso8g2270 320 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2270 Gso-Chr8 36544134 36545825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2270 52 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 50.545 4.39e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2270 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2270 - - gmx:100790319 590.882