Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2247 ATGACCGAGTACCGGATGAACCTGTGGACCGACGACAACTCCTCCGTCATGGAGGCCTTCATGAGCTCCTCCGACCTCTCCTCCCTCTGGCTTGCCACGCCGCAGTCCGCCACCTCCACCACAACTCCAGGCACGGCAAAAGCCCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGGCGCAGTCCCAGTCCCTCCTCAACCAGGAGACTCTCCAGCAACGCCTCCAGACTCTCATCGAAGGCGCCTGCGAGAGCTGGACCTACGCAATCTTCTGGCAATCTTCCTACGACTATTCCTCCGGCACCTCCCTTCTCGGCTGGGGAGACGGTTACTACAAGGGCGAGGAGGACAAAGACAAAGTCAAAACCAAAGCCCCCAAAACGAGGTCGTCCGCAGAGCAGGACCATCGTAAGAAGGTCCTCCGCGAACTTAATTCCTTAATTTCCGGCCCTTCCGCTTCAGCTGACGACATTGACGAAGAAGTCACCGACACCGAGTGGTTCTTCCTGGTGTCGATGACTCAGTCCTTCGTCAACGGTAGCGGGCTGCCGGGCCAGGCTTTTTTTAACTCGAGCCCGGTCTGGGTCGCCGGGCCCGAAAGACTTTCCGAATCGGCCTGCGAACGGGCCCGCCAGGGGCAGCTCTTCGGGCTCCAGACTCTTGTCTGTATACCGTCCGCAAACGGCGTCGTCGAGCTCGCCTCCGCGGAGGTCATTTTTCAGAACCCCGATCTGATGAACAAGGTGCGTGATTTGTTCAACTTCAACAACAACAACAACAACAACAACCCTGAAACGTGTTCCTGGGCGTTGAATTGCGTTGCCACCACCGATCAAGGCGAGAACGACCCTTCCTCGCTCTGGCTCAACCCTGAAATCAAAGACTCCTCCACCGTCTCGCCGCCGAATTCCACGGTTAATAAGACGATGCATTTCGAAACCCCTGGTTCCAGTACCCTAACCGAAACCCCTAGCGCTGCTGCTGCTGTTCACGTCCCCAATTCTAAAAGCCAGGGATTCTTCCCGAGGGAATTGAACTTTTCGAATTCATTGAAACCTGAATCCGGTGAAATTCTGAGCTTTGGGGAGAGCAAGAAGAGCTCTTACAATGGGGCTTTCTTTCCCGGTGTTGTTGCGGTTGAGGAGAACAACAACAATAACAAGAACAAGAAGAAGAGGTCCCCGGTGGTTTCTCGGAGCAGCATTGACGATGGAATGCTTTCCTTCACTTCCCTGCCGGCTGCAAATATAAAATCAGTTAACGGTGCTTGTGTCGGTGCCGGTGATTCGGATCACTCGGATCTGGAAGCTTCCGTGGCGAAACAGGTGGTGGAGCCCGAGAAACGGCCCCGGAAGAGAGGGCGAAAGCCGGCTAACGGAAGAGAGGAACCACTAAATCATGTGGAAGCCGAGAGACAGAGGAGAGAAAAGCTGAACCAAAGATTCTATGCTCTACGAGCTGTAGTTCCAAATGTATCCAAGATGGACAAGGCATCGCTGTTGGGGGACGCCATATTGTACATTAACGAGTTGAAATCGAAGCTCAACGTGCTGGATTCAGAGAAAACGGAATTGGAGAAGCAATTGGATTCAACCAAGAAGGAACTCGAGCTCGCAACTAAAAACCCTCCTCCACCGCCACCGCCGCCACCACCACCAGGACCGCCTCCATCTAATAGCGTAGAACCAAAGAAGACAACAAGCAAGCTCGCTGATTTGGAGTTAGAGGTGAAGATCATTGGTTGGGATGCAATGGTAAGAATCCAATGCAGCAAGAAGAACCACCCTGCAGCCAGGTTGATGGCAGCATTGAAAGATCTTGACTTGGAAGTGCATCACGCCAGCGTGTCTGTGGTGAATGATTTGATGATCCAACAAGCCACGGTGAACATGGGAAACAAGTTTTACACGCAGGAACAGCTTCTGTCGGCACTATCATCCAAAGTTGGCGATGAACTACGATAG 1965 0.5364 MTEYRMNLWTDDNSSVMEAFMSSSDLSSLWLATPQSATSTTTPGTAKAPPPPPPPPPPPAQSQSLLNQETLQQRLQTLIEGACESWTYAIFWQSSYDYSSGTSLLGWGDGYYKGEEDKDKVKTKAPKTRSSAEQDHRKKVLRELNSLISGPSASADDIDEEVTDTEWFFLVSMTQSFVNGSGLPGQAFFNSSPVWVAGPERLSESACERARQGQLFGLQTLVCIPSANGVVELASAEVIFQNPDLMNKVRDLFNFNNNNNNNNPETCSWALNCVATTDQGENDPSSLWLNPEIKDSSTVSPPNSTVNKTMHFETPGSSTLTETPSAAAAVHVPNSKSQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGAFFPGVVAVEENNNNNKNKKKRSPVVSRSSIDDGMLSFTSLPAANIKSVNGACVGAGDSDHSDLEASVAKQVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAILYINELKSKLNVLDSEKTELEKQLDSTKKELELATKNPPPPPPPPPPPGPPPSNSVEPKKTTSKLADLELEVKIIGWDAMVRIQCSKKNHPAARLMAALKDLDLEVHHASVSVVNDLMIQQATVNMGNKFYTQEQLLSALSSKVGDELR* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2247 654 SUPERFAMILY Formin homology 2 domain (FH2 domain) 49 59 - -
Gso8g2247 654 MobiDBLite consensus disorder prediction 540 560 - -
Gso8g2247 654 PANTHER MYC 9 650 IPR045084 GO:0003700|GO:0006355
Gso8g2247 654 MobiDBLite consensus disorder prediction 435 472 - -
Gso8g2247 654 MobiDBLite consensus disorder prediction 45 62 - -
Gso8g2247 654 MobiDBLite consensus disorder prediction 538 567 - -
Gso8g2247 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 253 IPR025610 -
Gso8g2247 654 CDD bHLH_AtAIB_like 459 535 - -
Gso8g2247 654 MobiDBLite consensus disorder prediction 31 64 - -
Gso8g2247 654 MobiDBLite consensus disorder prediction 115 136 - -
Gso8g2247 654 Pfam Helix-loop-helix DNA-binding domain 466 511 IPR011598 GO:0046983
Gso8g2247 654 Coils Coil 508 542 - -
Gso8g2247 654 Gene3D - 454 541 IPR036638 GO:0046983
Gso8g2247 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 531 IPR036638 GO:0046983
Gso8g2247 654 PANTHER TRANSCRIPTION FACTOR MYC2 9 650 - -
Gso8g2247 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 462 511 IPR011598 GO:0046983
Gso8g2247 654 SMART finulus 468 517 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2247 Gso-Chr8 35920939 35923389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2247 1 650 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.948 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2247 bHLH-MYC_N 1.4e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2247 K13422 - gmx:100785708 1155.58