Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2242 ATGGCTGCTGTTGTCAACCCCAGAACTTGGATTCCATATATGAACAGCAAAGACTGTTCACAAGGATTTTGTAGCTTGTACTGTCCACAGTGGTGTTACATTGTGTATCCCCCTCCTCCACCCTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTGTCATCGCAATCATTGGAATCTTGGCCACTGCTTTTCTTCTGGCGAGTTACTACACTCTAATATCCAAGTACTGTGGCCCCAGAGAGTCCGCACGTAGAGACCCAAATGATGAAAACTTTCAAGACGACCTCAACCACAATTCATATCTCCGCGAGCATGCTTCAATCGCGGGTCTGGACGAAGCTATGATCAAATCCATTGCGGTTTTCAAGTACAAGAAAGGAAGTATTGGTGGTTCTGCTGGAGTCACGGATTGTTCAGTTTGCCTAAGCGAGTTTGAAGATGATGAAAGTGTTAGGCTCTTGCCAAAGTGCAGCCACGTTTTCCATGCTCCTTGCATCGACACGTGGCTCAAGTCTCACTCTAGCTGCCCCTTGTGTCGTGCTGGCATATTCACCTTCACTTCTTCGGCGGCGCCACCACCTCAGGATGAGGCCGAGGCCCCTTCAAGAAACCAAACTACTCATCATAATGAAAGTGGCGGCAACGAGTTTGGCGTGGTGGCGCTTCAAGAAGAAGAAGAAGAAAGCATGCATCACGCTAGAGCATATCCAAATCCTGCATTGCGCGCTTTTAGCGACTTGAGTTGCTTTCAGGGTAGGCACAGAGTGATTGATATTAGAGACGAAGTGTGCGAATCCGTCGGTAGGTCGGTGTCTATGGACCATTCGTCATTTCAAAGTGCTCTTTCTGTTGCTGATGTGTTGCAAATGAGTGAAGAGGAAGATGCCACTGAAGCTGGCCCTTCAAAGAGGTCACGCGGAGAGAGTAGCAAGTGCAGATACAAAACAAGGGTGTTGCATTGTGTGCTGAGCCCAATTTCAATGAAGAGATCATCGTTTTCCAGTGGAAGAAGATTCTCGGTTAGCAAAAGTGGCAGAGGAAATTAG 1059 0.4759 MAAVVNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLASYYTLISKYCGPRESARRDPNDENFQDDLNHNSYLREHASIAGLDEAMIKSIAVFKYKKGSIGGSAGVTDCSVCLSEFEDDESVRLLPKCSHVFHAPCIDTWLKSHSSCPLCRAGIFTFTSSAAPPPQDEAEAPSRNQTTHHNESGGNEFGVVALQEEEEESMHHARAYPNPALRAFSDLSCFQGRHRVIDIRDEVCESVGRSVSMDHSSFQSALSVADVLQMSEEEDATEAGPSKRSRGESSKCRYKTRVLHCVLSPISMKRSSFSSGRRFSVSKSGRGN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2242 352 SUPERFAMILY RING/U-box 141 192 - -
Gso8g2242 352 MobiDBLite consensus disorder prediction 296 315 - -
Gso8g2242 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 348 IPR044675 -
Gso8g2242 352 MobiDBLite consensus disorder prediction 194 218 - -
Gso8g2242 352 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Gso8g2242 352 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 348 - -
Gso8g2242 352 SMART ring_2 142 183 IPR001841 -
Gso8g2242 352 Pfam Ring finger domain 141 184 IPR001841 -
Gso8g2242 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
Gso8g2242 352 MobiDBLite consensus disorder prediction 203 217 - -
Gso8g2242 352 MobiDBLite consensus disorder prediction 300 315 - -
Gso8g2242 352 CDD RING-H2_PA-TM-RING 141 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2242 Gso-Chr8 35658329 35660776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2242 1 347 C3H Transcription Factor Family AT3G03550 37.760 3.80e-61 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2242 - - gmx:100812969 689.108