Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2241 ATGACTTTGGAAACTCTTCAATCCAATGAGTTCTCCAACTTCATTATCTATGACACTATCTCTGCAACTCCATTTAGCAGCCATGGCTCCCCAGAGGCTAGTTTCTTGGAAAGTTTTGTGAACTATCAGGAGCAGCATGACCACCCTACATTTGATAATTGCGCAATGAGGACCCGAAAGCGTGAAGCCAGCGAACCAGAAAGCATTGGCCGGAGGCAGAATTCGGTGGCAGTGCAAGGGAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAACACGGAAGAGGCTGAGACACAAAGGATCACACACATTACAGTGGAAAGAAACCGCCGGAAGCAGATGAATGAGCATCTTGCTGTCCTTCGTTCACTCATGCCGGAGTCCTACGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTAAAAGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTTTTGCACCAAGAAGTGGCACAAACCAATGAAAATACGGCCATTTCCAAACTCATGCAACCTCCTTTTGCACATTGTTTTTCGTATCCACAGTACACATGGTCCCAGACTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACTTTAATCGAGACCCATGCAAATCTTCGAATTCTCACCAGGAGAAGCAGCCACGGGCAGCTAACAAAGTTAGTAGCTGGTTTTCAAACGCTGTGCCTCACCGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTGTTCTATTCCTTCAGTGCTAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCAACGGCAGTCCATCATTTGCTTGCAAGAATTGAAGAAGAGGCTTCCCTTTGCTGTTGA 912 0.466 MTLETLQSNEFSNFIIYDTISATPFSSHGSPEASFLESFVNYQEQHDHPTFDNCAMRTRKREASEPESIGRRQNSVAVQGRKKRRRKPRVCKNTEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLHQEVAQTNENTAISKLMQPPFAHCFSYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRRSSHGQLTKLVAGFQTLCLTVLHLNVTTIDPLVFYSFSAKVEEGFQLGSVDGIATAVHHLLARIEEEASLCC* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2241 303 CDD bHLH_AtFAMA_like 102 161 - -
Gso8g2241 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 168 IPR036638 GO:0046983
Gso8g2241 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Gso8g2241 303 MobiDBLite consensus disorder prediction 58 97 - -
Gso8g2241 303 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Gso8g2241 303 PANTHER TRANSCRIPTION FACTOR BHLH71 1 302 - -
Gso8g2241 303 Coils Coil 147 167 - -
Gso8g2241 303 PANTHER MAX DIMERIZATION, MAD 1 302 - -
Gso8g2241 303 SMART finulus 105 156 IPR011598 GO:0046983
Gso8g2241 303 Gene3D - 91 168 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2241 Gso-Chr8 35609568 35612276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2241 91 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.098 1.31e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2241 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2241 - - gmx:100784115 579.711