Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2239 ATGTCGTCATCATCGGCCGCAGCGCCATACAACACCCCGCCGGCACTGATCGCCTTCTTGCTGGGCATGCTCGTGGTGTGCTTTGTGGTGTTCAGCATTGTGTACATGTGCAAGTATTGCTTCTCTGGTGTGATCAACACCTGGGCTTCCCAGCCTATCATTTCGAGCTCCCTCATTCGCCTTACACCGTTTCGGTCCCCTCCTCGAGGCCTCGACCCAAAGCTTCTCCAGGTTTTCCCCACCTTCCCTTACGCCTCTATTAAAGACCTTAGCAAGGATCAAAAGTACGACCTCGAATGTGCAATTTGCTTGTTGGAGTTCGAGGATGATAACATGGTTCGCCTCTTGACGCTCTGTTGCCACGTCTTCCACCAGGATTGCATTGATCTCTGGCTCCGCTCGCACAAGACCTGCCCCGTTTGTCGACGACACCTCGATTCGCCCCCGAATGAAATAGAGAAAGTCGTGGACGTTAACGAGGGTGTGGTGGTCACGTCCACGAGCAGGGAGATACATATTGATGTAACAGAAGGGAAATTGGATGGTTGTGGCGATGATGATGATGATGATACAAGTGGTGGAAATAAAAAACAAGAACATGAACATGGTCATGAGAATCATGAGGTGATCACTCATCAACAAGGGGGAAAAACATTTGCACGGTCACATTCGACGGGGCACTCGATAGTTTTGATAAGAAGAGATGGAAATAAGGAAAAAAATGATCATGAGAAGTATACGTTGATATTGCCGGAGCATGTTTTGAGAGAGAGGCATAATAATAAGCACAATTGTACAAGGAGTTGTGTGAGTTACAAGGACATGGCCATGCTTGTTGCTCCTCTTCCTGTTGCACCTTATAGTAATTGTGGCTTTGTTCAACCAGTTTCGCCAGCTGGCACCTCCTCCCCTGACCATACTCGGAAATAA 930 0.4828 MSSSSAAAPYNTPPALIAFLLGMLVVCFVVFSIVYMCKYCFSGVINTWASQPIISSSLIRLTPFRSPPRGLDPKLLQVFPTFPYASIKDLSKDQKYDLECAICLLEFEDDNMVRLLTLCCHVFHQDCIDLWLRSHKTCPVCRRHLDSPPNEIEKVVDVNEGVVVTSTSREIHIDVTEGKLDGCGDDDDDDTSGGNKKQEHEHGHENHEVITHQQGGKTFARSHSTGHSIVLIRRDGNKEKNDHEKYTLILPEHVLRERHNNKHNCTRSCVSYKDMAMLVAPLPVAPYSNCGFVQPVSPAGTSSPDHTRK* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2239 309 PANTHER RING-H2 FINGER PROTEIN ATL29 4 276 - -
Gso8g2239 309 CDD RING-H2_EL5_like 99 142 - -
Gso8g2239 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 148 IPR013083 -
Gso8g2239 309 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Gso8g2239 309 SUPERFAMILY RING/U-box 91 148 - -
Gso8g2239 309 MobiDBLite consensus disorder prediction 189 207 - -
Gso8g2239 309 Pfam Ring finger domain 99 142 IPR001841 -
Gso8g2239 309 PANTHER RING FINGER DOMAIN-CONTAINING 4 276 - -
Gso8g2239 309 SMART ring_2 100 141 IPR001841 -
Gso8g2239 309 MobiDBLite consensus disorder prediction 178 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2239 Gso-Chr8 35536082 35537011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2239 4 245 C3H Transcription Factor Family AT2G35420 31.148 1.73e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2239 - - gmx:102667755 621.313