Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2236 ATGGATTACGCTCGGGACGGGAACGTGGTGCAAATAATCACCGGCGGCGGCGGGGGTGGAGAGAGCTGGTCCGGCGACCAAGCCGATTGGGCGACGGAGGATGAGTACCGGTTTTGGAACAACAACAACAACAACGGTGGGGACTCAGAAACGACGCCATCGAACTCGAATTACGAGGGGCGGTCGTCGGAGCCGCCGAGTAAGAAGTCACGGAATTCGTCGCAAGAGGGTAGCTCCTCGAACCGGTCGAAGGCGATCGGGAAGATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTTAGGGCAGGGACCTGCCCTTACATAACAAACTGCAATTTCGCTCACAGCATTGAGGAGCTGCGCCGCCCGCCGCCGAATTGGCAGGAGATTGTGGCGGCCCACGAGGAGGAGAAGGCGGTGATGACCGAGCCGCCGCAACAGCCGAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTCTCTGGAGAAATGATGCAGAGGTCTTACAAGGGAAGGCATTGTAAGAAGTTTTACACGGAGGAAGGCTGCCCCTATGGGGATAGTTGCACCTTTCTTCACGACGAGCAATCGAAGAATCGCGAGAGTGTTGCTATAAGTTTGGGCCCTGGTGGTTATGCTGGTGGCGGTGGCGGTGGTTGTGGTAGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTGGTGGTGGTGGCAGTGGTGGTAACGGTGGTGTTAATGCTGCTGGGAATGGACCTAATTCAAAGCCCTCGAATTGGAAAACCAGGATTTGCAATAAGTGGGAGATGACAGGGTATTGCCCCTTTGGCAATAAGTGTCATTTTGCTCATGGTGCCACAGAATTGCACAGATATGGAGGCGGTCTTATGGAGGGTGAAAATAGAGATGCTGCTTCTGTGGTTGCCAGCGACACAAATAAGGGAGGGCCTTCAAAAGCTTCCGCCGATAATGTGGTTGCAGCAGTTACTCTGGCTGCTATTTCTGATGTGTATCATATTGGAGTCCCTTCACAAAGGCCTTCTTCCATGGCTATTCAGAGGCCAGGACAGAGAGCACATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATCGAAGACATTGAATAG 1149 0.5326 MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRFWNNNNNNGGDSETTPSNSNYEGRSSEPPSKKSRNSSQEGSSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMTEPPQQPREEFQIPTVGSSTFSGEMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGCGSGSGGGGGGGGGGVGGGGSGGNGGVNAAGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDAASVVASDTNKGGPSKASADNVVAAVTLAAISDVYHIGVPSQRPSSMAIQRPGQRAHQKWKGPDKISRIYGDWIEDIE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2236 382 ProSiteProfiles Zinc finger C3H1-type profile. 260 288 IPR000571 GO:0046872
Gso8g2236 382 SUPERFAMILY CCCH zinc finger 88 121 IPR036855 GO:0046872
Gso8g2236 382 ProSiteProfiles Zinc finger C3H1-type profile. 169 197 IPR000571 GO:0046872
Gso8g2236 382 SUPERFAMILY CCCH zinc finger 258 291 IPR036855 GO:0046872
Gso8g2236 382 Pfam CCCH-type zinc finger 173 195 IPR041367 -
Gso8g2236 382 MobiDBLite consensus disorder prediction 36 82 - -
Gso8g2236 382 MobiDBLite consensus disorder prediction 1 82 - -
Gso8g2236 382 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Gso8g2236 382 SMART c3hfinal6 260 287 IPR000571 GO:0046872
Gso8g2236 382 SMART c3hfinal6 169 196 IPR000571 GO:0046872
Gso8g2236 382 Gene3D - 254 292 - -
Gso8g2236 382 Gene3D - 85 121 - -
Gso8g2236 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 286 IPR000571 GO:0046872
Gso8g2236 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Gso8g2236 382 SUPERFAMILY CCCH zinc finger 168 197 IPR036855 GO:0046872
Gso8g2236 382 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Gso8g2236 382 MobiDBLite consensus disorder prediction 347 367 - -
Gso8g2236 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 25 211 - -
Gso8g2236 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 248 379 - -
Gso8g2236 382 Gene3D - 162 211 - -
Gso8g2236 382 PANTHER CCCH ZINC FINGER/TIS11-RELATED 248 379 IPR045877 GO:0003729
Gso8g2236 382 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 211 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2236 Gso-Chr8 35467342 35470982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2236 262 290 C3H Transcription Factor Family AT1G68200 62.069 3.93e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso8g2236 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2236 - - gmx:102665148 691.419