Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2233 ATGGATATAAACGAGGGAAGAAAGAAGGAAAAGGGCACACAACAGGAACGAAGAAAGGTTCCTTTTCTCAAGCTGTTCTCCTTTGCTGATTTCTACGATTGTGTTTTGATGGCTATTGGAACTGTTGGGGCATGTGTTCATGGTGCTTCTGTGCCTGTTTTCTTTGTCTTCTTTGGAAAGATTATCAATGTCATAGGCTTAGCTTACCTTTTTCCCAAAGAAGCTTCCCACGAAGTTTCCAAGTATGCGTTGGATTTTGTGTATCTAAGCATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCTGCAAAGATGAGGATGGCATACTTAAGGTCAATGTTGAATCAAGATATAAGTCTTTTTGATACTGAGGCATCTACTGGAGAGGTTATTTCTTCTATTACAAGTGACATCATCGTTGTTCAAGATGCACTGTCTGAGAAGGTTGGGAATTTCATGCACTACATAAGCCGTTTTATCGCAGGCTTTACCATTGGTTTTGTCAGAGTGTGGCAGATCAGTTTAGTGACACTTGCCATTGTACCCTTAATTGCCCTTGCTGGAGGCCTTTATGCATACGTGACAATTGGTCTTATTGGAAAAGTTCGAAAATCATATGTGAGAGCTGGTGAGATCGCTGAAGAGGTGATAGGCAATGTGAGAACGGTACAAGCATTTGCAGGAGAAGAAAGAGCAGTGAGATCATACAAAGTAGCTCTGATGAACACATATAGAAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTGGGATTAGGCTCTATGCATTGTGTCCTTTTCCTTTCATGGGCTCTTCTTGTTTGGTTCACTAGCGTAGTTGTTCACAAGAATATCGCCAATGGTGGCAACGCTTTCACTACCATGCTCAATGTAGTCATTTCTGGCCTGTCACTTGGGCAGGCAGCCCCAGATATTTCTGCATTTATAAGAGCAAAGGCAGCAGCTTATCCCATTTTTGAGATGATAGAGAGGGACACAATGAGCAAAGCCAGCTCAGAAAATGGTAAAAAGTTAAGCAAATTGGAAGGTCACATCCAGTTCAAGGATGTCTGTTTCAGTTATCCATCTCGTCCTGATGTGGTTATCTTCAACAATTTTTGTATTGAGATTCCTTCAGGGAAAATTTTAGCTCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACAGTTATATCGCTGATTGAGCGCTTTTATGAACCACTTTCTGGTCAAATACTATTAGATGGGAACAATATCAGGGAACTTGATCTTAAATGGCTTAGACAACAAATTGGATTGGTTAACCAAGAACCTGCACTTTTTGCCACAAGCATCAGGGAGAACATACTGTACGGAAAAGATGATGCCACTCTTGAAGAAGTAAATCAAGCTGTGATTCTTTCTGATGCTCAGTCTTTCATTAACAATCTTCCTGATGGGTTAGATACTCAGGTTGGTGAGAGAGGGATACAGTTATCAGGGGGACAGAAACAAAGGATAGCAATATCTCGTGCTATAGTTAAGAATCCATCAATCCTTTTATTAGATGAAGCAACCAGTGCTCTGGATTCAGAGTCGGAGAAAAGTGTACAAGAAGCTCTTGATCGTGTAATGGTTGGTAGAACAACCGTAATAGTTGCACACAGACTTTCTACCATTAGGAATGCAGATATGATCGTTGTTATTGAGGAGGGAGGAAAGGTGGTGGAAATTGGAAATCATGAGGAACTCATTTCCAACCCAAATAATAATGTATACGCATCTCTTGTTCAAATCCAAGAAAAGGCCTTTTCTCAAAGCCACATTTCTGGGGATCCTTACTTGGGAGGGTCATCAAGGTACTTGGGAGGGTCATCAAGGCACCTAGGAGAGTCATCATCCCGCGCAACAAGCTTTCGTGGTAGTTTCCGATCAGATAAAGAATCAACTAGCAAGGCTTTTGGAGATGAAGCCGAAGGTAGTGTTGGAAGTTCTTCAAGGCATGTCTCAGCAAGAAGACTGTATTCAATGATTGGTCCTGATTGGTTTTATGGTGTTTTTGGAACCTTGGGTGCATTTATTGCTGGAGCACAGATGCCACTTTTTGCTCTTGGAATCTCTCACGCTCTTGTATCTTATTACATGGACTGGCATACAACACGTCATGAAGTGAAAAAGGTTGCTCTACTCTTCTGTGGGGCAGCAGTTTTAACCATCACTGCGCATGCCATTGAACATCTTTCCTTTGGAATCATGGGGGAACGGCTTACTCTTCGGGCAAGAGAAAAAATGTTTTCTGCTATTTTGAAGAGTGAAATTGGCTGGTTTGATGACATAAACAACACAAGTTCTATGCTTTCATCACGTTTAGAGACTGATGCAACATTTTTAAGAACTGTAGTTGTTGATCGATCAACGATTCTTCTGCAGAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCATGTTGAACTGGAGGATAACGCTTGTTGTATTGGCCACATACCCTTTAATCATTAGTGGTCACATTAGTGAGAAACTATTTATGCAAGGATTTGGGGGCAACCTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGGGAGGCTGTGAGTAATATCCGCACTGTGGCTGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCTCATGAGCTTGTGGAGCCTTCCAAGCGTTCATTCAATCGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCTTCTTATGGCCTTGCCTTGTGGTATGGATCCGTGTTGATGGAAAAGGAGCTTTCTAGCTTCAAATCAATTATGAAGTCATTTATGGTTTTAATCGTAACAGCGCTGGCTATGGGGGAGACTTTGGCACTGGCACCTGACCTTTTGAAGGGAAATCAAATGGTTGCATCGATTTTTGAAGTGATGGATAGAAAGACAGGAATATTGGGAGATGTTGGAGAAGAACTGAAGACAGTGGAAGGAACAATTGAGCTTAAAAGAATCCATTTCTGCTACCCTTCAAGGCCAGACGTGGTTATTTTCAATGATTTCAATCTTAAAGTGCTTGCAGGAAAGAATATTGCCTTGGTGGGGCATAGTGGTTGTGGTAAAAGCTCAGTCATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGGAAGGTGATGATAGATGGAAAAGACATCAAGAAACTCAATTTGAAATCCCTTAGGAAACATATTGGCCTAGTTCAACAAGAACCGGCTCTTTTTGCAACATCAATCTATGAAAATATTCTTTATGGTAAGGAAGGAGCCTCAGAAGCAGAAGTGATTGAAGCAGCTAAACTTGCCAATGCTCATAGCTTTATCAGTGCTCTTCCTGAAGGCTACGCCACCAAAGTAGGTGAGAGAGGAGTTCAACTCTCAGGTGGCCAGAAACAAAGGGTAGCTATTGCTAGAGCTGTTTTGAAAAACCCCGAAATTTTGCTGCTAGATGAAGCCACCAGTGCACTTGATTTGGAGTCCGAGCGTGTTGTGCAACAAGCTCTAGACAAATTGATGAAGAACAGAACAACAGTTATAGTTGCACACAGGCTATCCACAATAACAAATGCAGACCAAATAGCAGTATTAGAGGATGGAAAGATAATTCAGAGAGGGACTCATGCAAGACTTGTAGAGAACACAGATGGAGCATACTACAAATTAGTCAGCCTTCAACAACAGCAGCATATACAAGAACATAATGATTAA 3765 0.4157 MDINEGRKKEKGTQQERRKVPFLKLFSFADFYDCVLMAIGTVGACVHGASVPVFFVFFGKIINVIGLAYLFPKEASHEVSKYALDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITSDIIVVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLAIVPLIALAGGLYAYVTIGLIGKVRKSYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKVALMNTYRNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKNIANGGNAFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTMSKASSENGKKLSKLEGHIQFKDVCFSYPSRPDVVIFNNFCIEIPSGKILALVGGSGSGKSTVISLIERFYEPLSGQILLDGNNIRELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEEVNQAVILSDAQSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDSESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIVVIEEGGKVVEIGNHEELISNPNNNVYASLVQIQEKAFSQSHISGDPYLGGSSRYLGGSSRHLGESSSRATSFRGSFRSDKESTSKAFGDEAEGSVGSSSRHVSARRLYSMIGPDWFYGVFGTLGAFIAGAQMPLFALGISHALVSYYMDWHTTRHEVKKVALLFCGAAVLTITAHAIEHLSFGIMGERLTLRAREKMFSAILKSEIGWFDDINNTSSMLSSRLETDATFLRTVVVDRSTILLQNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEQKVLDLYAHELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELSSFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTGILGDVGEELKTVEGTIELKRIHFCYPSRPDVVIFNDFNLKVLAGKNIALVGHSGCGKSSVISLILRFYDPTSGKVMIDGKDIKKLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVIEAAKLANAHSFISALPEGYATKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDLESERVVQQALDKLMKNRTTVIVAHRLSTITNADQIAVLEDGKIIQRGTHARLVENTDGAYYKLVSLQQQQHIQEHND* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2233 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 601 IPR027417 -
Gso8g2233 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 598 IPR003439 GO:0005524
Gso8g2233 1254 Gene3D - 359 638 IPR027417 -
Gso8g2233 1254 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524
Gso8g2233 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g2233 1254 CDD ABC_MTABC3_MDL1_MDL2 361 601 - -
Gso8g2233 1254 SUPERFAMILY ABC transporter transmembrane region 25 331 IPR036640 GO:0005524|GO:0016021
Gso8g2233 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g2233 1254 MobiDBLite consensus disorder prediction 627 664 - -
Gso8g2233 1254 CDD ABC_MTABC3_MDL1_MDL2 1006 1244 - -
Gso8g2233 1254 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524
Gso8g2233 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Gso8g2233 1254 Pfam ABC transporter transmembrane region 688 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g2233 1254 Pfam ABC transporter transmembrane region 38 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso8g2233 1254 Pfam ABC transporter 380 528 IPR003439 GO:0005524
Gso8g2233 1254 Pfam ABC transporter 1025 1173 IPR003439 GO:0005524
Gso8g2233 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 991 - -
Gso8g2233 1254 Gene3D - 996 1254 IPR027417 -
Gso8g2233 1254 SMART AAA_5 1033 1205 IPR003593 -
Gso8g2233 1254 SMART AAA_5 388 574 IPR003593 -
Gso8g2233 1254 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 13 1248 IPR039421 -
Gso8g2233 1254 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 13 1248 - -
Gso8g2233 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1244 IPR027417 -
Gso8g2233 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 334 - -
Gso8g2233 1254 SUPERFAMILY ABC transporter transmembrane region 673 987 IPR036640 GO:0005524|GO:0016021
Gso8g2233 1254 MobiDBLite consensus disorder prediction 627 641 - -
Gso8g2233 1254 Gene3D ABC transporter type 1, transmembrane domain 85 982 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2233 Gso-Chr8 35291189 35311644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2233 10 1250 Calmodulin-binding Proteins AT2G36910 50.830 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2233 K05658 - gmx:100809752 2390.53