Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2227 ATGTACGAAGAAAGTAGTTGCTATGATGATCCCAATGCAATGGTTTCACAATCAGAGGGAGTTATGTCTGCCACACAGACCCACAACCACAACCACAACAACAACACCGCCTTTGCCTACTCTTATTCCAGTGGAGAAGATGCTGCAAATGCAAATGCTAACGCTGCAATAGCAATGGAAATCATTGCAGAACACCCTCAACAAAATCAATACAATTATAGCAACACCCCACTTGAGAATCATCACCAACTTCCTTATCCCACACCAACAGTACCAGATCTCCTTAACCTTCTCCACTTCCCAAACCCTATTCCAGGAGATAATAGCACAAACGTCTCCTCTGTCTCCTATGACCCTTACTTGCATCTCAACCTGCAGCAGCAACAACAACAACCTACCCTCAGAGACTTGCTTCCACACATGCCGGCTCTAAGTAATGATTTCCCCTTCGCTGGCCACGCCGTCGAAGGAGAAGGCATTCAAGGCTTTGGAAATGGAGTGGTGGACTTCACTCAAGATGTTGGGAAAAAGAGAGGTGGAAAAAGGACCAAGCAGTTCACTAGCACCATCACTGAGAAACAAAGGAGAGTGGATTTGAGCAGTAAATTTGATGCTTTGAAAGAACTCATCCCAAACCCCTCCAAGAGTGATAGAGTATCAGTGGTAGGAGATGCTATTAACTACATCAGAGAGCTTAAGAGGACAGTGGAAGAACTCAAATTACTGGTGGAGAAGAAGAGGCATGATAAACAAAGGGTGATGATGAGGAGGAGGCACGAGGTTGAAGCTGATGAAGGTGACTTCTCCAACCTGCAGGAACCAGATCAATACAGTGAAAACTTAAGAAGTTCTTGGATACGGAGAAAATCCAAAGACACCGAGGTTGATGTGCGCATTGTTGACAACGAGGTCACAATTAAGCTTGTTCAGAGGAAGAAGATCGATTGCTTGGTGCATGTCTCGCACCTTCTCGATCAACTTAACCTTGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTCTTCAATACCAAGATATGTGAAGGTTCATCACTTTATGCAAGTGCCATAGCCCACAAGCTCATTCAGGTCATGGACACAAGTTTTGCAGCAGCGTCACTCGCTTAA 1143 0.4514 MYEESSCYDDPNAMVSQSEGVMSATQTHNHNHNNNTAFAYSYSSGEDAANANANAAIAMEIIAEHPQQNQYNYSNTPLENHHQLPYPTPTVPDLLNLLHFPNPIPGDNSTNVSSVSYDPYLHLNLQQQQQQPTLRDLLPHMPALSNDFPFAGHAVEGEGIQGFGNGVVDFTQDVGKKRGGKRTKQFTSTITEKQRRVDLSSKFDALKELIPNPSKSDRVSVVGDAINYIRELKRTVEELKLLVEKKRHDKQRVMMRRRHEVEADEGDFSNLQEPDQYSENLRSSWIRRKSKDTEVDVRIVDNEVTIKLVQRKKIDCLVHVSHLLDQLNLDLQHVAGGHIGDFCSYLFNTKICEGSSLYASAIAHKLIQVMDTSFAAASLA* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2227 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Gso8g2227 380 Gene3D - 176 251 IPR036638 GO:0046983
Gso8g2227 380 SMART finulus 189 238 IPR011598 GO:0046983
Gso8g2227 380 CDD bHLH_AtMYC1_like 191 248 IPR045896 -
Gso8g2227 380 PANTHER TRANSCRIPTION FACTOR BHLH91 1 377 IPR045895 GO:0006355|GO:0048658
Gso8g2227 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 255 IPR036638 GO:0046983
Gso8g2227 380 Coils Coil 229 249 - -
Gso8g2227 380 Pfam Helix-loop-helix DNA-binding domain 189 232 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2227 Gso-Chr8 35051527 35054208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2227 1 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 37.642 7.34e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2227 HLH 6.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2227 - - gmx:102663981 651.358