Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2210 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGACCCCAACTTCCGGGTTGGTGGTTCCTATGACGAGCGAAGGTTTATAGATGAAAGATATCCAAGGGATGCTGTTTACCAGAGAAATAATTTCCACCGTGACATTTTGGATAGGGAGGCCTATCTGCCACCTGGACCTCCTGTTGGCCACTGGAGTCAAGCCAAACGGAGAGGTTATGATGAAGATTATGCACTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCGTATAATCAGATTGATGGTTTCAGGGATCGTGAGATTGACACCTATCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGTTGGAAATGACCATGGTGATGATTATGCATATGATGATGATTATGACTACAAGTCTCGAGCGTCCTCTCATCATCATAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGACATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAATTGGAGGCAACGCGAATCACGTGATCGGGAAAGAGATAAGAGAGGTCATAGTCGGGAAAGAGATCTGAGTCCACATAGGAGACGTGAGCGTTCTCGTTCCCATTCTCGTTCTCGATCCCGGTCTCATTCCCATTCTCATTCCCGATCTCAATCTCGTGGACATGATGACCATCCAAGATCTAGGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATAAGGCAGATAGCTATTCTGACAGTCGATATGACAAAAGCGAAAGACGTAGGGATCGTGATGATAAACGTCAGCGAGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCTGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTATGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGATGATGGCCTTGTTGTGGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACCGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGTACTATATGTGGCTACATTAATTTTGCGCGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACTGATGATGCACCTGCAGCAGATATTTCATTGTCAAATTCAGCAGCTATAGGAAAGAAAGGTTCAGAGGCAGGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTCGATGATGCTACCAAAGCTCTCGAGGCAACAAATGGAACTATGCTAGAAAAGAATGGGCAGATTCTAAGAGTGGCGTATGCAAAAAGTATCCTAGGCCCTGGATCAGGAACATCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCGACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGCCAAACAATCTACTGGTCCAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGCTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACACACCTTGCACTGATCAAAATCAGAATAAAACGTCTAATAACGAGTCTGAACCTTCTAAGGTATCTGATAGTTCTGAAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTGCTTCAGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTACAGGCTGCAGCAGCTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATACTGGCAAACAAGAAAAAAATGAACAATGTGTTGACCATGTGGAAGCAAAGGAGCCATGAGGGGCAGGCTACTCGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGGCATTCTGCAAAGAATAAGTTAAAAAATGAGACTATGGTAAGGGAAAGTAATGCTTCTAATCCGGGAAGTCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCGGGCACAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTATTCAGGTTCTACATCTGTTGCATCATCTATGCCAAGTTTACCTTCAGCGAATGCTGATGCACAGACATTTGCTACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACCATCTGCGACTGTTGGAAGTGGTCGAAGAAGGTTTTCGGAAATGCCTCAATCTGCTTCAACTCACAAGGAACAACCTCAAACAACTTACAGGGACCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTAGCTGACCTTGAAATTGGGGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCCATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCATAGTTGGAGATGCCAACCTTGATACTTTTGAGGTGATTACGGCCGAAAAAGCAATTGACGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACAGAAAATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGGGATGTCAGAGAGTTAA 3174 0.4499 MDPGRYALHQGWDNNSALEGYGAVHDPNFRVGGSYDERRFIDERYPRDAVYQRNNFHRDILDREAYLPPGPPVGHWSQAKRRGYDEDYALDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFVGNDHGDDYAYDDDYDYKSRASSHHHREDSHERDYDHGRHSYDSDYERGSRRDSNWRQRESRDRERDKRGHSRERDLSPHRRRERSRSHSRSRSRSHSHSHSRSQSRGHDDHPRSRSPRGRSHGRSYKADSYSDSRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSMGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVDDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDAKQSTGPEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYTPCTDQNQNKTSNNESEPSKVSDSSESKKVISAPATTVASVEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSSGHSAKNKLKNETMVRESNASNPGSHTTLAQVAAIDSRAQPRPVSNSLGGTVMGVIRGSGRGVVKSDTYSGSTSVASSMPSLPSANADAQTFATPFRTDVSALGSYTPSATVGSGRRRFSEMPQSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRIVGDANLDTFEVITAEKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFRGMSES* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2210 1057 Pfam G-patch domain 980 1021 IPR000467 GO:0003676
Gso8g2210 1057 CDD OCRE_SUA_like 598 650 IPR035623 -
Gso8g2210 1057 SUPERFAMILY RNA-binding domain, RBD 462 551 IPR035979 GO:0003676
Gso8g2210 1057 SUPERFAMILY Ran binding protein zinc finger-like 404 439 IPR036443 -
Gso8g2210 1057 SMART G-patch_5 977 1023 IPR000467 GO:0003676
Gso8g2210 1057 MobiDBLite consensus disorder prediction 877 909 - -
Gso8g2210 1057 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 387 IPR000504 GO:0003723
Gso8g2210 1057 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 544 IPR000504 GO:0003723
Gso8g2210 1057 PANTHER FI21118P1 38 220 - -
Gso8g2210 1057 PANTHER FI21118P1 223 1054 - -
Gso8g2210 1057 MobiDBLite consensus disorder prediction 877 902 - -
Gso8g2210 1057 Gene3D - 448 568 IPR012677 -
Gso8g2210 1057 CDD RRM1_RRM2_RBM5_like 462 542 - -
Gso8g2210 1057 MobiDBLite consensus disorder prediction 230 248 - -
Gso8g2210 1057 ProSiteProfiles G-patch domain profile. 979 1025 IPR000467 GO:0003676
Gso8g2210 1057 SMART zf_4 411 435 IPR001876 -
Gso8g2210 1057 Pfam OCRE domain 601 649 IPR041591 -
Gso8g2210 1057 SUPERFAMILY RNA-binding domain, RBD 297 392 IPR035979 GO:0003676
Gso8g2210 1057 ProSiteProfiles Zinc finger RanBP2 type profile. 409 438 IPR001876 -
Gso8g2210 1057 MobiDBLite consensus disorder prediction 747 796 - -
Gso8g2210 1057 ProSitePatterns Zinc finger RanBP2-type signature. 413 432 IPR001876 -
Gso8g2210 1057 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 368 IPR000504 GO:0003723
Gso8g2210 1057 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 532 IPR000504 GO:0003723
Gso8g2210 1057 Gene3D - 236 390 IPR012677 -
Gso8g2210 1057 MobiDBLite consensus disorder prediction 166 304 - -
Gso8g2210 1057 PANTHER RNA-BINDING PROTEIN 223 1054 - -
Gso8g2210 1057 PANTHER RNA-BINDING PROTEIN 38 220 - -
Gso8g2210 1057 Gene3D - 406 439 - -
Gso8g2210 1057 MobiDBLite consensus disorder prediction 648 676 - -
Gso8g2210 1057 MobiDBLite consensus disorder prediction 249 301 - -
Gso8g2210 1057 SMART rrm1_1 465 540 IPR000504 GO:0003723
Gso8g2210 1057 SMART rrm1_1 308 383 IPR000504 GO:0003723
Gso8g2210 1057 CDD RRM1_RRM2_RBM5_like 305 385 - -
Gso8g2210 1057 MobiDBLite consensus disorder prediction 166 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2210 Gso-Chr8 33628543 33636678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2210 306 528 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 2.06e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2210 K13094 - gmx:100787998 1881.69