Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2204 ATGGGATTTAGAAAGCTTCAAGTGTCATGCCATCTGATCAGGTTAACTCAGCACCTTGGTGAATTTGTTGTGACGTTTCCAAGAGCTTATCATGTAGGATTCAACCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGTTTAGAGTAACTAAGGAAGCTGTAGTGCGTAGAGCTACAATGAACTATCTTCCTACTTTCCCATCAACTACTCTGGATGTGCAAAGGTTGAAAAGTTATAACCTCTAG 261 0.4138 MGFRKLQVSCHLIRLTQHLGEFVVTFPRAYHVGFNHGFNCGEAANFGTPQWFRVTKEAVVRRATMNYLPTFPSTTLDVQRLKSYNL* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2204 86 Pfam JmjC domain, hydroxylase 11 46 IPR003347 -
Gso8g2204 86 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 70 - -
Gso8g2204 86 SUPERFAMILY Clavaminate synthase-like 10 60 - -
Gso8g2204 86 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 13 70 - -
Gso8g2204 86 ProSiteProfiles JmjC domain profile. 1 63 IPR003347 -
Gso8g2204 86 Gene3D Cupin 3 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2204 Gso-Chr8 32635530 32638673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2204 14 76 C2H2 Transcription Factor Family AT5G04240 74.603 1.68e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso8g2204 JmjC 5.9e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2204 - - gsj:114422876 183.726