Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2182 ATGGGAACGACGTCGTGTGAGAAGAAGAGCGTCGTGTACGTGAGCTGGGACGAGGTGTTCGTGTCGAACGACAAGGGGAGGAGGGAGGTTCATTACTTGCTTAAACGAAGAGGCGGTGGCTCGGATCTGGCCGTTTTGGGAAAAGAGAAGAGCCTCCTCAGACACATGTCGTATCGCTACGCCATTCGAAACGCCGCGTTGTTTAAGCCTTACTTGAAGCTCAGGTCGCGCAGAGAGGTTGTTGATTGGCTGGATTCAATTGTTTCAGATTCGTCTTCAGGGGATGCGGTTATGGTGGGAAAACATGGTTATGAACCTGAAATTGGAGCCTTGAAGGACAATCAATTGCAGAAGATGCACAGTTGTACAAAAGAGTTCTCATGGATAGGGTTGCCATGGACGTGTAAGAAAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCCGTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCCTACTTGGAAGACCTTTATGAGGATTCCAGAGGCAACAGGATGGTTGTGGTGCGCTGGTTTCACAAAATTGATGAGGTTGGTATTGCTTTGCCGCACAGTTTTAGTGACAGAGAGGTTTTCTTTTCTCTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGATTGGCTTTCGTGCTCAGTCCTGGGCATTACAAAAAGTTTCAGAATGAGGCCTGTCGTACTCACTTGGAACCATTCATGTGCAACCACCAGTTCGATAATGATGATGTGAAACCCTTTGATATAACACGGATTAAGGGTTATTGGAAACAGGAAATTCTCAGGTACATGTATGCCCAATTGGACTTGAAGTCTAGTGGGAGTTCCGGGCAATCTGATGTTAGCCTGGAACTTGATGAAAATCATACATCTACTGCTTTTGTCAGACCTAAGAAGAGGCTGTGCCTTACTGAAGCAGCTGATGCCAAAGAAGCAGCTGATCTGGTTGGCCTTAGTACAGAAAATCTGAATAACAGCAATACTGGAAACAATTCTGGGAAACTGGTTGGGCACACAAACAAGACAGCAACCATTAAAGGGAAAAATGAACATGCTTCACACCATTTAATTGTAGGTTCCCAAGTCGAGGTCCTCTCTCAAGACAGTGGGATGAGAGGATGCTGGTTTAGAGCTTCTGTCATTAAGAAGCACAAAGATAAAGTCAAGGTGCAATATCAAGACATTCTGGATGCGGTCGATGAAACCAAGAAGCTTGAGGAATGGGTTTTAGCTTCCAGAATAGCAGTGGCTGACTGCCTGGGTCTTCGAATGCGTGGGAGGACCATGGTCCGGCCAGATCCACCATCCAACAAACGAGAATTATCGTGGGTCGGTGATGTTGGTTTTGTTGTTGATGCTTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAGGACTCCGAAGCTAATTATCATGTTTATTTCCCAGGGGAAAAAGTGGTGTCAGTATTTGGTCCTGGTAACTTGAGAGTGTCTCAAGATTGGGTAGGGAATGAGTGGATATATGTGAGGGAAAGGCCTGATCTTGTGGCTTCTGTTTTATCTAGCTTGAAAACAAAGCAAAATTCCAATAACAGCCAATCAACTGGAGCAACCACCAGAGATGTAATACAATCCGGGCAATCAGATACTTGCTTGGATTCTGATAAGGATAGACCAAGAAAGCCTGAAGTGGTTCCAGACCTTTTGAAGAATGATTTGTTATCCCAGTTAAGGTGGAAGACCACCAGAAAGAGGAGACGCGGGAGCAGCGCCACCTCATATCAGAAGCCACAGTGCACTGACACCCATCAGAAGAGGTCGCCGAATGTTGTCACATCAAATGCTCCTGACAGTTTTGTGATCCCAGCATCATTAAAAGTTGATCATGATGACTGCAAGTATGTTGGGGATCCTTCCATCTTCAGTTCTTCAGTTGTGCCTTCTCTAACTAACATGGTTATGTGTAGGTGA 2010 0.4488 MGTTSCEKKSVVYVSWDEVFVSNDKGRREVHYLLKRRGGGSDLAVLGKEKSLLRHMSYRYAIRNAALFKPYLKLRSRREVVDWLDSIVSDSSSGDAVMVGKHGYEPEIGALKDNQLQKMHSCTKEFSWIGLPWTCKKRRKHYQAYKRNGFQISVHDFVFVLAEEDKRLVAYLEDLYEDSRGNRMVVVRWFHKIDEVGIALPHSFSDREVFFSLYLQDLSIECIDGLAFVLSPGHYKKFQNEACRTHLEPFMCNHQFDNDDVKPFDITRIKGYWKQEILRYMYAQLDLKSSGSSGQSDVSLELDENHTSTAFVRPKKRLCLTEAADAKEAADLVGLSTENLNNSNTGNNSGKLVGHTNKTATIKGKNEHASHHLIVGSQVEVLSQDSGMRGCWFRASVIKKHKDKVKVQYQDILDAVDETKKLEEWVLASRIAVADCLGLRMRGRTMVRPDPPSNKRELSWVGDVGFVVDAWWHDGWWEGIVVQKDSEANYHVYFPGEKVVSVFGPGNLRVSQDWVGNEWIYVRERPDLVASVLSSLKTKQNSNNSQSTGATTRDVIQSGQSDTCLDSDKDRPRKPEVVPDLLKNDLLSQLRWKTTRKRRRGSSATSYQKPQCTDTHQKRSPNVVTSNAPDSFVIPASLKVDHDDCKYVGDPSIFSSSVVPSLTNMVMCR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2182 669 Pfam BAH domain 152 259 IPR001025 GO:0003682
Gso8g2182 669 MobiDBLite consensus disorder prediction 564 578 - -
Gso8g2182 669 ProSiteProfiles BAH domain profile. 150 267 IPR001025 GO:0003682
Gso8g2182 669 MobiDBLite consensus disorder prediction 593 629 - -
Gso8g2182 669 MobiDBLite consensus disorder prediction 537 563 - -
Gso8g2182 669 MobiDBLite consensus disorder prediction 537 578 - -
Gso8g2182 669 PANTHER AGENET AND BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 6 668 - -
Gso8g2182 669 MobiDBLite consensus disorder prediction 604 629 - -
Gso8g2182 669 Pfam Agenet domain 376 452 IPR008395 -
Gso8g2182 669 SMART agenet_At_2 371 437 IPR014002 -
Gso8g2182 669 SMART agenet_At_2 460 516 IPR014002 -
Gso8g2182 669 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 6 668 - -
Gso8g2182 669 Gene3D - 122 266 IPR043151 -
Gso8g2182 669 SMART BAH_4 150 267 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2182 Gso-Chr8 29095332 29098657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2182 383 514 PHD Transcription Factor Family AT5G58610 29.078 1.74e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2182 - - gmx:100817358 1357.81