Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2176 ATGAAGGTTTTCGTGAAGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACGCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAAGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAGTAGTTTTATTGTAATTATGCTATCAAAGACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCTAAGCGCGAGCAGGAACAGCAACATGGAACTCCAGCGGCACCACGCGAACGCGACGCAGCACACCGCACCAGCACCTGCACCACGACGGCAAACTCAGCACCCAGCACCATGCTCGCGACACGGCACCCCGCACCAGCGCACCACACACACGACGAACGGACGGTGACGGTGGCGGCGGCGGCAACGGCTACAGTCTGTGACGGCAAGCCAAGTGCAACTCCTACTTCAACTTCTGTGTCTACTGCACCTCAAGCTCCTGCTTCAACTGGAGCATCGGCTACACCTGTTACTGCCCCAACAGCTGCTCCTGCACCTGCACCTGCACCAGCTGCTCCAGCTCCAGCTCCTGCTCCTATATTTTCAGGCTCTTCTGTCAGGCCAGAGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGTAACTTGGAGGGAACAATTCAGCAAATCCTTGACATGGGTGGAGGAAGCTGGGACAGGGATACTGTTGTTCGCACCCTTCGTGCTGCTTATAACAACCCCGAGAGAGCTGTTGAATATTTGTATTCTGGCATACCAGAGCAAGCCGAAGCTCCACCAGTTACCGGAGTGCCTGCAAGTGCTCAACCTTCAAATCCTCCAGCTGATACTCCACAGGCAGCACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCTAATGTTGGGTCTGGTGCTGCTGGTGCTGGTTCCTTAGACTTTCTTCGCAACAGTCAACAGTTCCAAGCCTTACGCGCTATGGTACAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGCGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCCTAATTAATGAACCTGTTGAAGGGGGTGAGGGAAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAATAA 1410 0.4986 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAESSFIVIMLSKTKSSSGEGSTTSTAPSAKREQEQQHGTPAAPRERDAAHRTSTCTTTANSAPSTMLATRHPAPAHHTHDERTVTVAAAATATVCDGKPSATPTSTSVSTAPQAPASTGASATPVTAPTAAPAPAPAPAAPAPAPAPIFSGSSVRPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPADTPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2176 469 MobiDBLite consensus disorder prediction 101 115 - -
Gso8g2176 469 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gso8g2176 469 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gso8g2176 469 MobiDBLite consensus disorder prediction 193 209 - -
Gso8g2176 469 SMART CBM 342 385 IPR006636 -
Gso8g2176 469 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 422 463 IPR015940 -
Gso8g2176 469 MobiDBLite consensus disorder prediction 296 323 - -
Gso8g2176 469 Gene3D - 417 464 - -
Gso8g2176 469 SUPERFAMILY UBA-like 235 290 IPR009060 GO:0005515
Gso8g2176 469 SUPERFAMILY XPC-binding domain 341 406 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gso8g2176 469 MobiDBLite consensus disorder prediction 116 131 - -
Gso8g2176 469 TIGRFAM rad23: UV excision repair protein Rad23 150 468 IPR004806 GO:0006289
Gso8g2176 469 MobiDBLite consensus disorder prediction 77 144 - -
Gso8g2176 469 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 147 468 - -
Gso8g2176 469 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 130 - -
Gso8g2176 469 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 130 - -
Gso8g2176 469 PANTHER UV EXCISION REPAIR PROTEIN RAD23 147 468 - -
Gso8g2176 469 CDD UBA1_Rad23_plant 232 281 - -
Gso8g2176 469 Gene3D - 335 400 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gso8g2176 469 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Gso8g2176 469 Gene3D - 231 281 - -
Gso8g2176 469 SMART ubq_7 1 75 IPR000626 GO:0005515
Gso8g2176 469 Pfam XPC-binding domain 344 399 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gso8g2176 469 MobiDBLite consensus disorder prediction 77 99 - -
Gso8g2176 469 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 236 279 IPR015940 -
Gso8g2176 469 SMART uba_6 238 278 IPR015940 -
Gso8g2176 469 SMART uba_6 425 462 IPR015940 -
Gso8g2176 469 MobiDBLite consensus disorder prediction 286 331 - -
Gso8g2176 469 MobiDBLite consensus disorder prediction 161 189 - -
Gso8g2176 469 SUPERFAMILY UBA-like 406 468 IPR009060 GO:0005515
Gso8g2176 469 Pfam UBA/TS-N domain 241 276 IPR015940 -
Gso8g2176 469 Pfam UBA/TS-N domain 425 460 IPR015940 -
Gso8g2176 469 Gene3D - 1 80 - -
Gso8g2176 469 CDD Ubl_Rad23 1 74 - -
Gso8g2176 469 PRINTS DNA repair protein Rad23 signature 370 392 IPR004806 GO:0006289
Gso8g2176 469 PRINTS DNA repair protein Rad23 signature 419 435 IPR004806 GO:0006289
Gso8g2176 469 PRINTS DNA repair protein Rad23 signature 436 450 IPR004806 GO:0006289
Gso8g2176 469 PRINTS DNA repair protein Rad23 signature 451 466 IPR004806 GO:0006289
Gso8g2176 469 MobiDBLite consensus disorder prediction 160 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2176 Gso-Chr8 28342398 28353008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2176 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.55e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2176 K10839 - gmx:100813881 640.573