Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2171 ATGAAGTTGAGTTGCAATGGGTGTCGCATTCTCCGCAAAGGTTGTGGTGAGGATTGTGCCATAAGGCCATGCCTCGAGTGGATCAACACTCCTCAGGCCCAAGCCAACGCTACCCTCTTCCTTGCCAAATTCTATGGTCGTGCTGGCTTGGTCAACCTCATCGATTCTGCCCCACAACACAATGGACCTGCTGTATTCAAGTCACTATTGTATGAGGCATGTGGGAGAATTGCGAATCCGACATTTGGGTCAGTGGGCTTGTTTTGGACCGGTGAGTGGGCCCAATGCCAAGCTGCCGTTGATGCTGTGCTAGCTGGGTCCCAGATCAAGGTCGTGGGAGCTTCCGATTCGCAGGGGATTGCGACACATGGCGACGAGCATGTTGCCCAAATCCTTGGCATTCGCCACGTGTCCAAAGATGCTGAAATGGACCATGTGAAAGGAAGAGCCAAGAAGATCAAGAGATCTAGGACAGTGATCAAGCCAAAGCCACAAGTGAGTTCAATTGACTCGGCTGCGATGTTGAAGCTGACTTGGAGCCGTGAGCCAGGAGGGTCCGAGGGTGATAGTGAGGAAACTGTGGAAGCTATGTTGGTGAGCCAAAACAAGCCGAGTCGTAATGGTGGAGTTGAGATGGATTTGGATCTCACTCTCGGCTAG 660 0.5212 MKLSCNGCRILRKGCGEDCAIRPCLEWINTPQAQANATLFLAKFYGRAGLVNLIDSAPQHNGPAVFKSLLYEACGRIANPTFGSVGLFWTGEWAQCQAAVDAVLAGSQIKVVGASDSQGIATHGDEHVAQILGIRHVSKDAEMDHVKGRAKKIKRSRTVIKPKPQVSSIDSAAMLKLTWSREPGGSEGDSEETVEAMLVSQNKPSRNGGVEMDLDLTLG* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2171 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 219 - -
Gso8g2171 219 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Gso8g2171 219 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Gso8g2171 219 PANTHER LOB DOMAIN PROTEIN 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2171 Gso-Chr8 26923605 26925156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2171 1 218 AS2 family AT3G02550 46.522 1.53e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso8g2171 LOB 9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2171 - - gmx:100789066 442.58