Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2168 ATGGTGGAGCCTCTTAATCAATCGACTCCTAGGACGAAAAAAATGAAACACAAGCGAAATCCGATTCATGACTCGAAAATGACGAGGAAACTGCGCATCATTTGCAATGATCCTGATGCTACTGACTCTTCATCTGATGAGGATGAGTATTTTGGGAATGTTAGGAAGATGAAGAGAACTGTGCTTGAGATTGCTCTTCCACCTGTTCCGGTTAACCCTGTGGTTGCAGATGAAACTAGTACTGAGAGCACAAACAATGATGAATTGAACCAGACGAAGAGGGTTATGGCGAAAACCCCCTCAGTGAAGAGGCAATCTTGTGGGAAATACAAAGGTGTTCGGATGCGGAAATGGGGCAAATGGGCCGCGGAGATTCGTGACCCTTTCAAGGGCACGCGAATCTGGTTGGGCACTTTCAGCACTGCAGAAGAGGCTTCTCAAGCCTATGAGACCAGAAGGCTTGAGTTTGAGGTCATGGCCAAGGCTCTATCTGATGAGAAGAGCAACAATGGCAGCAGCAACAACAATGTTGTTGCTTCTGCTGAAACTGAAACTGTGGCTGCCCCTGAAAATAACAGTTCAAACTATTGTGTTTCTTCTGCTGCAGGTTCTGTATCAGACTCCAAGTCTGCTTTTATGGATGAATCAGAGAGTGTGTTGTCACACACATCACCATCTTCTGTGCTTGAATTGGATACATCTGCTTCCAATTTGATTGGGAGTGGTAAGGTTTCAAGCAATGAAATTGTTGAGACTAAAGGGTTGGAGGCCGAAGTTGCTGAGACTAAAAGTTTGGCAGCTGAATTTGCCGAGCTGGAAATCCAAGATTTGAGTATGCTGAATGTACCATCCCCATCTGCTGTTGCTGCTGCTACGTCTGAGTATGAATTGGATTTGTTGGCATTTGACAGTTTCAAATATGGATTTGATTATGAACATGGCTTTGACGATGATTTTGCTGCCCTGGAAGACATTCACATTTGCAGTTTTGATGATAATGAGCCTAGCGAGCTTCCTGATTACGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAG 1095 0.4429 MVEPLNQSTPRTKKMKHKRNPIHDSKMTRKLRIICNDPDATDSSSDEDEYFGNVRKMKRTVLEIALPPVPVNPVVADETSTESTNNDELNQTKRVMAKTPSVKRQSCGKYKGVRMRKWGKWAAEIRDPFKGTRIWLGTFSTAEEASQAYETRRLEFEVMAKALSDEKSNNGSSNNNVVASAETETVAAPENNSSNYCVSSAAGSVSDSKSAFMDESESVLSHTSPSSVLELDTSASNLIGSGKVSSNEIVETKGLEAEVAETKSLAAEFAELEIQDLSMLNVPSPSAVAAATSEYELDLLAFDSFKYGFDYEHGFDDDFAALEDIHICSFDDNEPSELPDYDFDDFGADEFAGWIEEPLNIPCV* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2168 364 SUPERFAMILY DNA-binding domain 109 155 IPR016177 GO:0003677
Gso8g2168 364 Pfam AP2 domain 109 155 IPR001471 GO:0003700|GO:0006355
Gso8g2168 364 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Gso8g2168 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 9 364 - -
Gso8g2168 364 MobiDBLite consensus disorder prediction 11 25 - -
Gso8g2168 364 CDD AP2 109 149 IPR001471 GO:0003700|GO:0006355
Gso8g2168 364 PIRSF PTI6 3 235 IPR017392 GO:0003700
Gso8g2168 364 PIRSF PTI6 223 356 IPR017392 GO:0003700
Gso8g2168 364 SMART rav1_2 109 163 IPR001471 GO:0003700|GO:0006355
Gso8g2168 364 MobiDBLite consensus disorder prediction 1 27 - -
Gso8g2168 364 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Gso8g2168 364 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Gso8g2168 364 Gene3D AP2/ERF domain 108 163 IPR036955 GO:0003700|GO:0006355
Gso8g2168 364 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2168 Gso-Chr8 25967076 25969578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2168 14 363 AP2-EREBP Transcription Factor Family AT1G68550 35.537 1.95e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g2168 AP2 4.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2168 - - gmx:102667919 676.781