Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2153 ATGGTTGCATATCCTGGACTTCCCGGTGAATCTCTAGGTCGAGCTCGGAGACGAAACAGCTCAGGAGAAAGGAGGGTGGGAATCCGACGATTCTATTGGCTAAAGCTTCAAATTGATGGAGTTACTTTGACAGATGAAGTATCTATGGCTATGTCCATGGTTTCCAATCATGAAAATCAATTCAGACTTGTCATGGTTAAACTCAACATGCCTGGCCTACATGACCTTGCGTTTGTGGATTTATTGCATGAGAAGGACATTCCAGTTGTTTTCATCTCATCTGGAGGGTCTGAGGATACTATTTGGAAAACATTAGCTAAAGGACCTTGTTATTTCCTCGAGGAACCAATCCTTTTTGAGGATCTCCAATACTTGTGGCTAATTGCACATCAGTCAAAACCTAAGTCAGCAATAGAAGCACAACATGCAAACAAGGCTTGTAGAGAAAAGGAAGAAAGGAAGATTGATAATGATGGTAATGAAAGCAAGCAAGGAGAGAAGAGAGAAGAACTTAGGCCAGCCATGATGAACTTTAACCGTGATAACCATATACCTAAGGAGACTGAGAAAAGAAGAGAACACAAAATTGGATTTGCGAAGAAAAGGAAAATCCTTTGGACTCTTGAGCTGCGTCAAAAGTTCACAGAAGCCCTAGAATATCTAGGCGGCATTGAGAGTAATATTGCTCGTCCAAAAGCGATTCAAAAATTAATGAAAGTGTCTGACCTAACATTAAACCAGATTTCAAGTTATATGCAGAGATACAAACTTCAGCTAAAGCGTAATAAGGTCACTATCGGTTATGGTTCATATCAAGCGGGTACATCATCAAACATTAGTGGCAAGACTACGTTTCCCTCCTCGTTAGGGAGTTCAAGTTACCGAGGTATCCCTACATCATTTGCTCCCTTAAATGCGAGCCCAAAACAAGACCTGAACTCTGGTGAAACTCAAGAATCAGATATTCACAAACTGCAGAGTGTCCTAAGCAATTCATTTGTTGCAAATGAATTGGCCAGCCAAATTGATGGTGCTATAGTGGGAAACTCTATTCCAAATGCTTCTTCAACACTTCAAAACCTACCTGAAAATGAATATGAAGAGTTCTTCAGAAGTCTTGAAGATATTGAAACTGATAATTTTGGACTCATGATGTAA 1158 0.4007 MVAYPGLPGESLGRARRRNSSGERRVGIRRFYWLKLQIDGVTLTDEVSMAMSMVSNHENQFRLVMVKLNMPGLHDLAFVDLLHEKDIPVVFISSGGSEDTIWKTLAKGPCYFLEEPILFEDLQYLWLIAHQSKPKSAIEAQHANKACREKEERKIDNDGNESKQGEKREELRPAMMNFNRDNHIPKETEKRREHKIGFAKKRKILWTLELRQKFTEALEYLGGIESNIARPKAIQKLMKVSDLTLNQISSYMQRYKLQLKRNKVTIGYGSYQAGTSSNISGKTTFPSSLGSSSYRGIPTSFAPLNASPKQDLNSGETQESDIHKLQSVLSNSFVANELASQIDGAIVGNSIPNASSTLQNLPENEYEEFFRSLEDIETDNFGLMM* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2153 385 SUPERFAMILY Homeodomain-like 199 261 IPR009057 -
Gso8g2153 385 MobiDBLite consensus disorder prediction 144 170 - -
Gso8g2153 385 SUPERFAMILY CheY-like 49 131 IPR011006 -
Gso8g2153 385 CDD REC_typeB_ARR-like 13 130 - -
Gso8g2153 385 Gene3D - 198 262 - -
Gso8g2153 385 Gene3D - 28 153 - -
Gso8g2153 385 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 337 IPR045279 GO:0009736
Gso8g2153 385 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 257 IPR006447 GO:0003677
Gso8g2153 385 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 41 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2153 Gso-Chr8 23765793 23803781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2153 41 261 Response Regulator Gene Family AT2G25180 26.809 3.25e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso8g2153 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2153 - - gmx:102668176 760.37