Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2139 ATGGCAGCAGCGTTCCAAGAAGGTAGCGGCGGTGGCCGCGGCGGCGACGAAGACGCGACCATCGACGTGCACACCACGCGCGGCACTCCCATCCGCTACCTCCCCCTCGACCACCTCTACTCCGCCACCTCACCCTGCCGCGTCACCGCCAGCGGCTCCTCCAACGTCATGTCGAAGAAAATCAAAGCTCGCAAACTCACCCTAACGCATAATAATAATAATAATAATAATAATCATTACAACAACCACGAACACAAGAAAACGACCTCGTCTTCTTCTTCGTCCCTGGCCCTTCCTCCCAAGCCCCCTCTCCTCTTCGTCTACTCGCGCCGGCGCAAGAGGCATTCCCCTGCCGCTGCGACGACGGAGAACGACGAGAGCGAGAAGAGGTTGCTCAAGAAGAGGAAAATTGGGAGCACCGAGTTGGAGAGGTTGGGTGTGGATTTGAATACTGCGATTGGGGATGTTGACGGGCCCAGATTGAGGGAATGTAGAAATCAATTTGGGAATTCTGGTGCTGCTGGGAATGCTAAGTATGGTTCCTTGGAGAATTTGCCCAAAGTGTTGCCCGAATCTCGCAATGTGAAGAAATGGGTCGGGTTGAGTTTTGATAATGCTGATCCCGAGGCATTTGTTGGATTACGATGCAAGGTTTACTGGCCCATGGATTTAAAAGCATACATTGGCTACGTCAGAAGTTATGATAAGGAAACTAAGATACATCATGTCAAGTACGACGATGGTGATGAGGAAAATTTAATTATTGCAAATGAAAATATAAGATTCCATGTTTCCTGCGATGAGCTGAAACATTTAAAATTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATAATGTTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGACTTCGAGCCTGGGGATATCATATGGGCCAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGTTTTTGGGAGGAAGCTCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCTAAAAGATATTTAAGTGAACAGAAGCTTCCATTGGAGATGCTAGAGTTGCAGAAAAGATGTACAGCTGATGGCTGTAACAACGTAAGTGGAGAGGATGGAGGATGCTCATATTCAGGTGATGATTGTTTAAATGGCAAGGGGACTTTGATGGCTCTGGAAACCGTTGAAAATTTTCCATATGAAGTTGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTAAAGATTCTGCTTTCAGGGATGGAAGATTCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCAGTTACAGACCCTAAAGTTTCTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAACTTCGTCCTCTGTTTAGAGTGACAGTTGAAGGTGGTGAGCAGTTCAATGGTTATACACCATCTGCTTCCTGGAATGAGGTATACGAAAAGATAAAGAAAATGGAAAAGGATGCTTCTGAAGGTACTGTTGCTGAAGGTGGGGAAGAAAAGGGCTACGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTACTTAAACTTATACAGGGATTGTCTAAATCCAAAATCTCTTCAAAGAACTCAATTTGCAAGTTAGGTTCCAGAAGATGTAATAATAACTTGCCTCTTGGTTATAGGCAAGTTCATATTAACTGGTTTGACCTCGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGGGAACTGGAACCTGTTAATGGGGTGCTATGGTTATGCAACTTATGTCGTTCGGGTGCCCCTCCTCCACCTTGCTGCTTATGTCCACTGATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTATGAGTAGAATCAGTAAGGACCGCTGGAGGTTGTTATGCAGCATATGTGGTGTGTCTTATGGTGCCTGTATCCAATGTTCAAATAATTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTGTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAACCATCTAATGAACATTCTGTTGCTGATGATCGTATAGTCCGAGTTTCTGGTCTATGTTCAGACTATGAACCACCGCCTAATCCGTCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAGCATGGTTCATTAAACAACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCGGATTGACACATCAAACAGCATACTTTCTATCTCTGAAAAATATACGTACATGAGGGAAACCTTTCGGAAACGGCTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATACACTGGGGAACTTGTTAGACCACCTATAGCTGACCGGAGAGAGCACTTCATATACAATTCGTTGGTGGGTGCTGGAACATATATGTTTCGTATCGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCCAGAGTTATAAGCGTTAATGGCGATGAACATATTATAATATTTGCGAAGAGGGACATTAAACAGTGGGAAGAGCTTACATATGATTACAGATTTTTCTCAATTGATGAACGACTTCCTTGTTACTGTGGCTTCCCAAAGTGCCGAGGTATAGTAAATGATACTGAGGCAGAAGAACGAGCTGCTACCCTATATGCACCACGAAGCGAATTAATAGATTGGAGAGGAGAATGA 3267 0.4402 MAAAFQEGSGGGRGGDEDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKIKARKLTLTHNNNNNNNNHYNNHEHKKTTSSSSSSLALPPKPPLLFVYSRRRKRHSPAAATTENDESEKRLLKKRKIGSTELERLGVDLNTAIGDVDGPRLRECRNQFGNSGAAGNAKYGSLENLPKVLPESRNVKKWVGLSFDNADPEAFVGLRCKVYWPMDLKAYIGYVRSYDKETKIHHVKYDDGDEENLIIANENIRFHVSCDELKHLKLNFAKVRDNNVSDYNVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMFLGGSSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCTADGCNNVSGEDGGCSYSGDDCLNGKGTLMALETVENFPYEVGDLQILSLGKIVKDSAFRDGRFIWPEGYTAVRKFTSVTDPKVSAPYKMEVLRDPESKLRPLFRVTVEGGEQFNGYTPSASWNEVYEKIKKMEKDASEGTVAEGGEEKGYESGSDMFGFSNPKVLKLIQGLSKSKISSKNSICKLGSRRCNNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGMSRISKDRWRLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADDRIVRVSGLCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLNNLEPSGRGVCSKFFCSQQRLRTSRIDTSNSILSISEKYTYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLPCYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2139 1088 ProSiteProfiles PWWP domain profile. 307 370 IPR000313 -
Gso8g2139 1088 SUPERFAMILY SET domain 921 1061 IPR046341 -
Gso8g2139 1088 Pfam F/Y rich C-terminus 512 585 IPR003889 GO:0005634
Gso8g2139 1088 CDD PHD_ATX1_2_like 622 668 IPR042010 -
Gso8g2139 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 800 IPR013083 -
Gso8g2139 1088 Pfam SET domain 935 1041 IPR001214 GO:0005515
Gso8g2139 1088 SUPERFAMILY FYVE/PHD zinc finger 614 684 IPR011011 -
Gso8g2139 1088 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 16 1085 - -
Gso8g2139 1088 SMART fyrc_3 514 603 IPR003889 GO:0005634
Gso8g2139 1088 ProSiteProfiles Zinc finger PHD-type profile. 620 671 IPR019787 -
Gso8g2139 1088 ProSiteProfiles FYR domain FYRC motif profile. 510 596 IPR003889 GO:0005634
Gso8g2139 1088 PANTHER PHD FINGER PROTEINS 16 1085 - -
Gso8g2139 1088 ProSiteProfiles Extended PHD (ePHD) domain profile. 674 798 IPR034732 -
Gso8g2139 1088 Pfam PWWP domain 308 395 IPR000313 -
Gso8g2139 1088 Pfam PHD-finger 635 669 - -
Gso8g2139 1088 ProSiteProfiles FYR domain FYRN motif profile. 448 506 IPR003888 GO:0005634
Gso8g2139 1088 SMART fyrn_3 462 506 IPR003888 GO:0005634
Gso8g2139 1088 MobiDBLite consensus disorder prediction 1 21 - -
Gso8g2139 1088 Gene3D SET domain 871 1076 IPR046341 -
Gso8g2139 1088 Gene3D - 295 406 - -
Gso8g2139 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 668 IPR013083 -
Gso8g2139 1088 ProSiteProfiles Post-SET domain profile. 1048 1064 IPR003616 -
Gso8g2139 1088 MobiDBLite consensus disorder prediction 69 102 - -
Gso8g2139 1088 Pfam PHD-zinc-finger like domain 676 797 - -
Gso8g2139 1088 ProSiteProfiles SET domain profile. 924 1042 IPR001214 GO:0005515
Gso8g2139 1088 SMART PWWP_4 305 368 IPR000313 -
Gso8g2139 1088 CDD ePHD_ATX1_2_like 683 797 IPR041956 -
Gso8g2139 1088 Pfam F/Y-rich N-terminus 454 503 IPR003888 GO:0005634
Gso8g2139 1088 Gene3D - 209 263 - -
Gso8g2139 1088 SMART PostSET_3 1048 1064 IPR003616 -
Gso8g2139 1088 SMART PHD_3 732 798 IPR001965 -
Gso8g2139 1088 SMART PHD_3 622 669 IPR001965 -
Gso8g2139 1088 ProSitePatterns Zinc finger PHD-type signature. 623 668 IPR019786 -
Gso8g2139 1088 Gene3D - 449 588 - -
Gso8g2139 1088 CDD SET_SETD1-like 912 1060 - -
Gso8g2139 1088 SUPERFAMILY Tudor/PWWP/MBT 301 401 - -
Gso8g2139 1088 SMART set_7 924 1048 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2139 Gso-Chr8 23472817 23489437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2139 623 768 C2H2 Transcription Factor Family AT3G14740 39.735 1.03e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso8g2139 zf-HC5HC2H_2 4.2e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2139 - - gmx:100806736 2187.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2320 18 56083818 56096266 Gso8g2139 8 23472817 23489437 GST