Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2128 ATGCAATATGGCAAGCTTCCACTATCTTCACAAGCATCAGAGGAGAAAGAGGGGACAGTAGAAGACTTTGATGCTTATAATAATTATGCATCTTGGTCTTCAGAAACTGACATGTCTGAAATGGTTTCTGCTCTTTCTCAAGTTATGGGAACTACCAATCGGAACCCACACATGCCACAATCAAACTCCTTTCCTTCCTCAACTTCCGTGGTCAAAGATCAACCTCAACCATACCCATCTCAACCTCCTCCAGATCAAGAGGTGACAAAGAAGCCACACTACAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCAGCAGAAATCCGTGACCCAAAAAAAGCAGCAAGAGTGTGGCTAGGAACCTTTGAAACAGCAGAGGATGCAGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCTAAGCTCAATTTCCCTGAAAGACTTCATCAAAATGTTCCCTATATGCAACAACACCAACAAGGTTCCTCAAACAGAAACGTTTTTCCCTTCCATGCTACTTCCTCCACTTCTTCTAGTGCAACTGGGTCTGTTTCTTCTCTTGATGCTGTTGCCCCTCCTTCATTGTCCACACATGACCACCAAGTTTTCCCAAATCTGTATCAATATGCACAGATTCTTTCAAGTGGTGATGAAGAGTTCCCTTATTACACATCCCATCTTTTCAACCAACAACAACAACACCAACCTTTCAGTTCTCAATTCTCTACCACTTTTTCTTCCTCCTCATCTCCCTCATCCTACTTTTACAATCAGCAACAACAATATGATCAACAAGGACATGATCACTCAAACCACTAG 834 0.4329 MQYGKLPLSSQASEEKEGTVEDFDAYNNYASWSSETDMSEMVSALSQVMGTTNRNPHMPQSNSFPSSTSVVKDQPQPYPSQPPPDQEVTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERLHQNVPYMQQHQQGSSNRNVFPFHATSSTSSSATGSVSSLDAVAPPSLSTHDHQVFPNLYQYAQILSSGDEEFPYYTSHLFNQQQQHQPFSSQFSTTFSSSSSPSSYFYNQQQQYDQQGHDHSNH* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2128 277 Gene3D AP2/ERF domain 93 152 IPR036955 GO:0003700|GO:0006355
Gso8g2128 277 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Gso8g2128 277 CDD AP2 92 151 IPR001471 GO:0003700|GO:0006355
Gso8g2128 277 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Gso8g2128 277 PANTHER DNA-BINDING DOMAIN 4 266 IPR044808 GO:0003700|GO:0009873
Gso8g2128 277 MobiDBLite consensus disorder prediction 163 191 - -
Gso8g2128 277 MobiDBLite consensus disorder prediction 43 96 - -
Gso8g2128 277 MobiDBLite consensus disorder prediction 1 23 - -
Gso8g2128 277 PANTHER - 4 266 - -
Gso8g2128 277 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Gso8g2128 277 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Gso8g2128 277 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Gso8g2128 277 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Gso8g2128 277 MobiDBLite consensus disorder prediction 43 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2128 Gso-Chr8 23280682 23283643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2128 3 153 AP2-EREBP Transcription Factor Family AT5G61890 55.346 9.46e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g2128 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2128 - - gmx:100796624 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2305 18 55930135 55934188 Gso8g2128 8 23280682 23283643 GST