Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2116 ATGACTTCAACAAACCCTTCCCCAAATGCTTCCCCTGTTGCAGTGCCTCCTGCACTTGGTGGTATTTTATCACCACCACCTTCTTCATCTTCTCCAACAAATTCATCCAAATCACCGTCACCTCCCAATTCTCCTCAGCCTAATCAAACACAAACACCCAATTCCCCTGCTCCTTCATCACCTTCAGCTCCACCTCCTTCTCCTCCTTCTCCTCCTCAGGCAGTGCCTGTAACCCCTCCTCCTTCCATATCACTCTCTCCACCACCAACTCTGCCCCCTCCTTCACCACCAGATTCTCCACCACCATTGCCACCAGCATCTCCCCCCTCACCACCAGCTACCACTGCCCCTCCTCCAGCTGAAACTCCACCTTCCCTTCCAAATTTGTCTCCACCATCTCCACCAGATGGTTCCCCTCCTCCTCAATCACCTCCCACAACAATTCCACCTCCTTCTCGACCGGTTTCGCCGTCTCCTCCTCCTCCAGCCAATGTTCCAAGGCCACCATCCACTAGTACTCCTCCACAGAAACAGAGTCCACCAAAAACTACTCCTTCACATGCATCCCCTCCATCAGTTTCTGAAAGTCCTCCTAAACCTCCTTCCTCTGATGTTCACCCACCATCCACATTGCCTTCAGACACTTCAGGATCTTCACCTCCAGCTACTTTGCCTGACCCTCCAACTAATACAACAGCTGCCCAGGGTCCCACGGTGTCGCTGCCGTCTCTTCCAACTGAAAAACCCACTGCTAGACCAACTAATGATGGTACTAACAGTATGTCTTCAAACAACACACCTTCACATTCAGGAGGGTTGAGCACTGGAGGATCTGTGGCTATTGGAATTGTAGTTGGTTTTACTGTCCTCAGCCTTGTTATGGCCGTGTGGTTTGTACAGAAGAAAAAGAAGAAGGGAACAGGATCAAGAGGTGGTTATGCTGCTGCTTCTCCATTTACCTCATCCCACAACTCAGGTACATTATTCTTGAGGTCGCAGTCTCCAGCCAACTTTTTAGGTAGTGGTTCTGGTAGTGATTTTGTATATTCTCCATCAGAGCCTGGTGGAGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATCCAAGCTACAAATGGGTTTTCAGCACAAAATTTGTTGGGAGAAGGTGGATTTGGCTGTGTTTATAAAGGTTTGCTCATAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAGTTGGTGGTGGGCAAGGGGAACGTGAATTCAGGGCAGAAGTTGAGATTATTAGCCGAGTACATCATCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGGTGAAAATAGACCAGTTTTAGATTGGCCTACTAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTGCTTGATCTCAACTATGAAGCTCGAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCGACAAGTGGGAAACTTACTGAAAAATCTGATGTATATTCTTTTGGGGTTGTGCTGTTGGAACTAATTACAGGTCGGAAGCCGGTAGATGCATCTCAACCAATCGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTGTTGACTGAAGCACTTGACAATGAGGACTTTGAAATTTTGGTGGATCCAAGATTGGGAAAGAACTACGATAGAAATGAAATGTTTCGGATGATTGAGGCTGCTGCAGCCTGTGTACGCCACTCGTCGGTGAAGAGACCACGCATGAGTCAGGTGGTGAGAGCTTTGGATTCCTTAGATGAGTTTACAGATCTCAATAACGGAATGAAACCGGGGCAGAGTTCAGTGTTTGATTCTGCACAGCAATCTGCACAAATCAGAATGTTTAGGAGGATGGCTTTTGGGAGCCAAGATAGTTCCAGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGGGATCACAACTCAAATACTATGTTCTCCCAAAATAAAACTGGGCCTTGGAACGTTTGA 2175 0.4676 MTSTNPSPNASPVAVPPALGGILSPPPSSSSPTNSSKSPSPPNSPQPNQTQTPNSPAPSSPSAPPPSPPSPPQAVPVTPPPSISLSPPPTLPPPSPPDSPPPLPPASPPSPPATTAPPPAETPPSLPNLSPPSPPDGSPPPQSPPTTIPPPSRPVSPSPPPPANVPRPPSTSTPPQKQSPPKTTPSHASPPSVSESPPKPPSSDVHPPSTLPSDTSGSSPPATLPDPPTNTTAAQGPTVSLPSLPTEKPTARPTNDGTNSMSSNNTPSHSGGLSTGGSVAIGIVVGFTVLSLVMAVWFVQKKKKKGTGSRGGYAAASPFTSSHNSGTLFLRSQSPANFLGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHGENRPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLTEALDNEDFEILVDPRLGKNYDRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEFTDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSRDHNSNTMFSQNKTGPWNV* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2116 724 MobiDBLite consensus disorder prediction 1 273 - -
Gso8g2116 724 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 78 701 - -
Gso8g2116 724 SUPERFAMILY Protein kinase-like (PK-like) 354 649 IPR011009 -
Gso8g2116 724 Gene3D Phosphorylase Kinase; domain 1 353 451 - -
Gso8g2116 724 MobiDBLite consensus disorder prediction 228 273 - -
Gso8g2116 724 SMART serkin_6 376 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2116 724 ProSiteProfiles Protein kinase domain profile. 376 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2116 724 Pfam Protein tyrosine and serine/threonine kinase 379 649 IPR001245 GO:0004672|GO:0006468
Gso8g2116 724 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 78 701 - -
Gso8g2116 724 MobiDBLite consensus disorder prediction 698 724 - -
Gso8g2116 724 MobiDBLite consensus disorder prediction 38 207 - -
Gso8g2116 724 Gene3D Transferase(Phosphotransferase) domain 1 452 668 - -
Gso8g2116 724 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Gso8g2116 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2116 Gso-Chr8 23017652 23023575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2116 247 709 Trihelix Transcription Factor Family AT5G38560 70.253 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso8g2116 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2116 - - gmx:100790988 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2293 18 55806358 55813398 Gso8g2116 8 23017652 23023575 GST