Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2108 ATGCAACAACGGCTTCTACTTCCCTTTTTGTGCATCAACGTGAATAATGGCGACATATGCTACAATGAAGCCCACAAAGCTCAGCTTGGAGGAGCCTCGGGACCAGATCCACAAGTAAGGTTCACTCTTTCCTCCTTGCACGTCAAAAACCTCAAGAAAGTTTGTGCGGACTTGGTTCATGGTGCAAAGGGCAAGCGGCTCAGTGTTAAGGGACCTGTCAGGATGCCCACTAAGGCTCTTCATATCACTTCCAGGAAGTCCCTTTGTGGTGAAGGTACCAACACATAG 288 0.4861 MQQRLLLPFLCINVNNGDICYNEAHKAQLGGASGPDPQVRFTLSSLHVKNLKKVCADLVHGAKGKRLSVKGPVRMPTKALHITSRKSLCGEGTNT* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2108 95 Gene3D Ribosomal protein S10 domain 24 95 IPR036838 -
Gso8g2108 95 ProSitePatterns Ribosomal protein S10 signature. 62 77 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso8g2108 95 PANTHER RIBOSOMAL PROTEIN S20, PUTATIVE, EXPRESSED-RELATED 37 95 - -
Gso8g2108 95 Pfam Ribosomal protein S10p/S20e 40 91 IPR027486 -
Gso8g2108 95 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 37 95 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso8g2108 95 SUPERFAMILY Ribosomal protein S10 39 92 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2108 Gso-Chr8 22922152 22923711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2108 23 95 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 63.158 9.12e-26 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2108 K02969 - gmx:121175105 99.3673