Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2100 ATGTTGGATGGAGAAGCAACAATGGGCACGTGGGCTCGCATGTGCGACACGTGCCGTTCGGCCCCCTCCACCGTGTTCTGCCGCGCCCACACCGCCTTCCTCTGCGCCACGTGCGACGCGCGCCTCCACGCCTCGCTGACGTGGCACGAGCGCGTGTGGGTGTGTGAGGCCTGCGAGCGCGCCCCTGCGGCCTTCCTCTGCAAGGCTGACGCCGCCTCCCTCTGCGCCTCCTGCGACGCCGACATCCACGCCGCCAACCCCCTCGCCAGCCGCCACCACCGCGTCCCCATCCTCCCCATCGCCGCCGCCCCCGGCAACAACGACGACGTCGACGATGCTGACTTGGACGACGATGACGAAACCGCTTCATGGCTCTTGCTCAACCCTGTCAAAAGCGCTAGTGTCCCTAACAACAATAACACTAATAATGGTTTCTCGTATAATGGTGAGGTTGATGAGTATTTGGACCTTGTTGATGACTGCGACAACCACCACTTTGCTTCTGTTGCTACTACTACGGACCATTACTCTCATCAGCACCAACATTTCGGTGTTGTTTCTCACAAGAGTTATGCTGGGGACAGTGTTGTTCCGGTTCAGCACCACCAGCATTTTCAGCTTGGCTTGGAGTTTGACAACTCCAAAGCTGCCTTCAGTTACAATGCTTCTGTTAATCAAAGTGTTTCAGTTTCATCAATGGATATTGGTGTTGTACCTGAATCACCGATGAGGGATGTCTCAATTGGCCATACAAGAACCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCCATTCAGGTGCCTTCCCATTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGTATAAAAGGTCGATTTGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1041 0.5322 MLDGEATMGTWARMCDTCRSAPSTVFCRAHTAFLCATCDARLHASLTWHERVWVCEACERAPAAFLCKADAASLCASCDADIHAANPLASRHHRVPILPIAAAPGNNDDVDDADLDDDDETASWLLLNPVKSASVPNNNNTNNGFSYNGEVDEYLDLVDDCDNHHFASVATTTDHYSHQHQHFGVVSHKSYAGDSVVPVQHHQHFQLGLEFDNSKAAFSYNASVNQSVSVSSMDIGVVPESPMRDVSIGHTRTPKGTIDLFSGPPIQVPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2100 346 ProSiteProfiles Zinc finger B-box type profile. 10 54 IPR000315 GO:0008270
Gso8g2100 346 SMART bboxneu5 50 97 IPR000315 GO:0008270
Gso8g2100 346 SMART bboxneu5 10 46 IPR000315 GO:0008270
Gso8g2100 346 Pfam CCT motif 277 319 IPR010402 GO:0005515
Gso8g2100 346 Pfam B-box zinc finger 52 97 IPR000315 GO:0008270
Gso8g2100 346 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 11 346 - -
Gso8g2100 346 CDD Bbox1 14 52 - -
Gso8g2100 346 CDD Bbox1_BBX-like 54 97 - -
Gso8g2100 346 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Gso8g2100 346 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 346 IPR045281 GO:0009909
Gso8g2100 346 ProSiteProfiles CCT domain profile. 277 319 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2100 Gso-Chr8 22701621 22704271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2100 1 346 C2C2-CO-like Transcription Factor Family AT3G02380 55.556 9.03e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso8g2100 zf-B_box 8.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2100 - - gmx:100301885 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2278 18 55665227 55667887 Gso8g2100 8 22701621 22704271 GST
Gso13g0327 13 14633759 14636001 Gso8g2100 8 22701621 22704271 PCT
Gso19g0341 19 5537313 5539642 Gso8g2100 8 22701621 22704271 PCT
Gso8g2100 8 22701621 22704271 Gso13g0327 13 14633759 14636001 PCT
Gso8g2100 8 22701621 22704271 Gso19g0341 19 5537313 5539642 PCT