Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2083 ATGGTTGATCAAGCTGATTTAGTTATCGTTTGTGTCTCTGTTGGGGTGGCCCTTGGAGTTTTGATTGCTTGCCTCATATATTTTGGCATAAGGTGGTACAAGAAGCGAGCTCATCGTCTTAGCCGATCTGCGAACGAGCCTAGCTTAACAACTATCCCTATACGAACAAATGGATTAGAAACTAGCATTGACTTCAGTGCTTCTCTCACCAGTTCCATAGCCACTTCAAGGTCACCAAATCCTCACAATCCTCACAAAAGCTCACATTCAACTTGGTGGAGTCATCAGAATAAAGATGGGTTTGCTTCGGTATCAGGCATTCTGAAGTACTCATACAAAGAAATTCAAAAGGCCACACAAAACTTCACAAATACATTGGGAGAAGGATCATTTGGCACAGTTTATAAAGCAATGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGGACCCAATTCTAAACAAGGGGAGAAAGAATTTCAAACAGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATACTGCATAGATAAAGGACAGTTTATGCTGGTTTATGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAGGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGGTGATATTTCACACGGAATAGAATACCTTCATGAAGGGGCAGTCCCACCCGTCGTACATCGTGATTTGAAATCCGCGAATATATTACTTGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGTTCTCAAAGGAAGAGGTCTTTGATGGTCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTTCCTCAAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTCGAACTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATCCACCTTGCTGCAATGGATTATGATGGTGTAGATGGAATTCTTGACAAACAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAGCTTGCTAAAATTGCACACAAATGTTTACACAAATCACCTAGGAAACGCCCCTCCATTGGTGAGGTTTCGCTGGGTATATTGAGGATTAAGCAAAAGCGCCTCATGAAAGAAGACTCCATGTCATTTGCAAGCAGTAACTTCTCCCGAAGTGTGAGTCAAATAGAGGAGCAACAGGTTGAATTAACTAAAATAACCACCATAAACCACAGGGAAATGGGGTGA 1281 0.4106 MVDQADLVIVCVSVGVALGVLIACLIYFGIRWYKKRAHRLSRSANEPSLTTIPIRTNGLETSIDFSASLTSSIATSRSPNPHNPHKSSHSTWWSHQNKDGFASVSGILKYSYKEIQKATQNFTNTLGEGSFGTVYKAMMPTGEVVAVKMLGPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCIDKGQFMLVYEFMSNGSLENLLYGEEKELSWDERLQIAGDISHGIEYLHEGAVPPVVHRDLKSANILLDHSMRAKVSDFGFSKEEVFDGRNSGLKGTYGYMDPAYISSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYIHLAAMDYDGVDGILDKQLVGKCNLEEVRQLAKIAHKCLHKSPRKRPSIGEVSLGILRIKQKRLMKEDSMSFASSNFSRSVSQIEEQQVELTKITTINHREMG* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2083 426 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 423 - -
Gso8g2083 426 Pfam Protein tyrosine and serine/threonine kinase 122 375 IPR001245 GO:0004672|GO:0006468
Gso8g2083 426 SMART serkin_6 120 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2083 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Gso8g2083 426 ProSitePatterns Protein kinases ATP-binding region signature. 126 148 IPR017441 GO:0005524
Gso8g2083 426 Gene3D Phosphorylase Kinase; domain 1 85 195 - -
Gso8g2083 426 CDD STKc_IRAK 126 375 - -
Gso8g2083 426 SUPERFAMILY Protein kinase-like (PK-like) 89 375 IPR011009 -
Gso8g2083 426 Gene3D Transferase(Phosphotransferase) domain 1 196 404 - -
Gso8g2083 426 PANTHER OS01G0750732 PROTEIN 9 423 - -
Gso8g2083 426 ProSiteProfiles Protein kinase domain profile. 120 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2083 Gso-Chr8 22350639 22355735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2083 115 379 Receptor kinase-like Gene Family AT1G67720 44.043 1.29e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gso8g2083 PK_Tyr_Ser-Thr 4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2083 - - gmx:100792253 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2258 18 55487677 55492650 Gso8g2083 8 22350639 22355735 GST
Gso8g2083 8 22350639 22355735 Gso19g0324 19 5132239 5138226 PCT