Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2079 ATGGCTAGGTCTGCGAAAGGGCATCAGGATGAATTCGACGAAGATGATGAAGAAGAACTCTTAACTGGAAACATCTCTTCCAAAGTGAAGGTGGATGAACCCAGCACGGGGAAGAGGGTGAACCCTCATCGTTCAAAGCATTCAGAAACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTCATTGAGTATATTCAGTTCCTACAGGAAAAAATACAAATTTATGAACAGACTTATGAAGGATGGAATCAGGAGCCCACGAAATTAACTCCATGGAGAAATCATCATGGGCCTGCAGAAAATACTACAGATCCTTCTCAAGCTTCACAAAATGGGTCTGTTGATGAGAAAAATAACAATGTCTCTCCATTGTTGCCCAAAAATGTACAGAACCTGATAGAATCTGACTTCTCAATGACAACTATTCAGAAGGACCACACCCCTGGTTCAACTACAGAAGCAGTTCCGCTTCCCATGCAAATGCGATTGGACATGTTTGATCCAATTGTTAGCAGTGGTATGGCAACCCAACATCTGCAGGAACCTGTATCTAATGTTAACATGCCTTCCCATACCCAGCCTCAATTGTGGCTTAATAAACAAAGCAAGGGCAACTATATTGTTCCACATAATGATACAATGAAGGAACAGGAGGAGCTGGTGATTGAAAGTGGATCAGATAGCATCTCAAGTGCCTATTCTCAGGGAATTTTAGATTCTCTCACGCAAGCATTGCACTCTTCGGGCGTAGATATGTCCCAGACTAATGTCTCAGTGCAAATTGATGTGGGGAGACGAGCAAATTCTGGGTTGATCCCCTCTGCATATACTTCAAAGGGCCATGAAAACCAATTTGTGAGCAACCCAGCAATAGCACGTTCCGGGGTTGATTACTGCAATATTGATTCTGAACAAAGTTCAAAGCGGCTCAGACAAGAAGCAAGCTAG 1020 0.4275 MARSAKGHQDEFDEDDEEELLTGNISSKVKVDEPSTGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKIQIYEQTYEGWNQEPTKLTPWRNHHGPAENTTDPSQASQNGSVDEKNNNVSPLLPKNVQNLIESDFSMTTIQKDHTPGSTTEAVPLPMQMRLDMFDPIVSSGMATQHLQEPVSNVNMPSHTQPQLWLNKQSKGNYIVPHNDTMKEQEELVIESGSDSISSAYSQGILDSLTQALHSSGVDMSQTNVSVQIDVGRRANSGLIPSAYTSKGHENQFVSNPAIARSGVDYCNIDSEQSSKRLRQEAS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2079 339 MobiDBLite consensus disorder prediction 32 58 - -
Gso8g2079 339 SMART finulus 48 98 IPR011598 GO:0046983
Gso8g2079 339 Coils Coil 89 109 - -
Gso8g2079 339 MobiDBLite consensus disorder prediction 110 148 - -
Gso8g2079 339 Pfam Helix-loop-helix DNA-binding domain 44 93 IPR011598 GO:0046983
Gso8g2079 339 Gene3D - 41 114 IPR036638 GO:0046983
Gso8g2079 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 121 IPR036638 GO:0046983
Gso8g2079 339 MobiDBLite consensus disorder prediction 1 58 - -
Gso8g2079 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 92 IPR011598 GO:0046983
Gso8g2079 339 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 338 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gso8g2079 339 PANTHER TRANSCRIPTION FACTOR BIM3 1 338 - -
Gso8g2079 339 CDD bHLH_AtBIM_like 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2079 Gso-Chr8 22297932 22301512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2079 3 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.063 2.56e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2079 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2079 - - gmx:100791730 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2255 18 55462196 55466416 Gso8g2079 8 22297932 22301512 GST