Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2066 ATGGGTGCAGTTTGTTGCTGTTTCAATGTTGATGATTTTGAAGATTATATGAATCCAAATAGTTCTGTATATAGGAACTGTATGTGTCTCAGTTGCTTCGTACAGAACTTTTTGACTGTGTATGAATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATTCAGGGTGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGAAGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCTGGTGGCAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCCAAGTCCTCTGTAAGACTCTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCATCCTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAGCTGTCCTGTTTGTGGGAAGGTGATGGTATTTGATGAAACGACTGATTGA 684 0.4152 MGAVCCCFNVDDFEDYMNPNSSVYRNCMCLSCFVQNFLTVYESIFRRGEVHAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQREGLVSRREKGSSHLNEESEPLRGDVDADSESLNSGGKWNDTSEDGSKEYRSKSSVRLSSAKLTTGAGVVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDSCPVCGKVMVFDETTD* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2066 227 Pfam RING-H2 zinc finger domain 170 216 IPR024766 GO:0008270
Gso8g2066 227 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Gso8g2066 227 SUPERFAMILY RING/U-box 171 223 - -
Gso8g2066 227 MobiDBLite consensus disorder prediction 100 153 - -
Gso8g2066 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 225 - -
Gso8g2066 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Gso8g2066 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Gso8g2066 227 SMART ring_2 176 216 IPR001841 -
Gso8g2066 227 MobiDBLite consensus disorder prediction 100 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2066 Gso-Chr8 22060066 22064545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2066 1 224 C3H Transcription Factor Family AT5G38895 60.177 4.23e-98 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2066 - - gmx:100788192 475.322