Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2062 ATGGGAAGGGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACTAGCCAGCAAGTGACGTTTTCCAAGCGTAGATCGGGACTTCTCAAGAAAGCCAACGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGAACGCAGCATGGAAGACGTCCTGGAACGTTACGAGAGATATACACATACAGCACTTACTGGAGCTAATAACAATGAATCACAGGGAAATTGGTCTTTCGAATATATCAAGCTCACCGCCAAAGTTGAAGTCTTGGACAGGAACGTAAGGAATTTCTTGGGAAATGATCTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACAGCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATGAATCCATCTCAGACCTGCATAAAAGGGCAAGGACATTACAAGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGCGAAAACAGTGACTGAAGGTCCACATACTGGCCCAGAAACTCTAGGCCCAAATTCATCGACCCTTAACTTAACTTCTCCACAGCTACCACCACCACCACAAAGACTGGTTCCTTCTCTAACTCTCTGTGAGACATTCCAAGGAAGAGCATTGGTGGAAGAAACGGGAAAGGCTCAAACAGTCCCTAGTGGCAATTCTCTCATCCCACCATGGATGCTTCATATCTGA 747 0.4458 MGRGRVQLKRIENKTSQQVTFSKRRSGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALTGANNNESQGNWSFEYIKLTAKVEVLDRNVRNFLGNDLDPLSLKELQSLEQQLDTALKRIRTRKNQVMNESISDLHKRARTLQEQNSKLAKMKEKAKTVTEGPHTGPETLGPNSSTLNLTSPQLPPPPQRLVPSLTLCETFQGRALVEETGKAQTVPSGNSLIPPWMLHI* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2062 248 Coils Coil 121 180 - -
Gso8g2062 248 MobiDBLite consensus disorder prediction 165 179 - -
Gso8g2062 248 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Gso8g2062 248 PANTHER MADS BOX PROTEIN 1 225 - -
Gso8g2062 248 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 225 - -
Gso8g2062 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso8g2062 248 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gso8g2062 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso8g2062 248 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Gso8g2062 248 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g2062 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g2062 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso8g2062 248 MobiDBLite consensus disorder prediction 165 208 - -
Gso8g2062 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso8g2062 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso8g2062 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2062 Gso-Chr8 22028804 22041050 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2062 1 201 MADS-box Gene Family AT1G26310 56.863 1.89e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso8g2062 K-box 4.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2062 K09264 - gmx:100786580 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2239 18 55330515 55338827 Gso8g2062 8 22028804 22041050 GST
Gso13g0344 13 14899479 14921412 Gso8g2062 8 22028804 22041050 PCT
Gso8g2062 8 22028804 22041050 Gso19g0304 19 4546777 4564134 PCT