Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2061 ATGGGTAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTTACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGAAGTTACCAAACCTGCCAAAGAGCTCGAGCAGAGCAGCTATCGTGAATACTTGAAGCTGAAAGCAAGATTTGAATCACTTCAAAGGACTCAAAGAAACCTTCTAGGGGAAGACCTGGGCCCACTGAATACCAAAGAACTTGAGCATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAGTGAAGCTGGAAGAAATCAATTCAAGAAACCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCCATATGGTGGTGGTCCACAGAATTCTCACTCTCATCAGGGCTTCTTCCAGCCATTGGAATGCAACCCTACATTGCAGATTGGTCCTGATTACAGGTACAATGATGTAGCTTCAGATCAGATAACTGCCACAACTCAACCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTGTGA 756 0.4471 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVTKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEHLERQLDSSLKQVRSTKTQFMLDQLSDLQTKEQMLVEANRSLTVKLEEINSRNHYRQSWEAGDQSMPYGGGPQNSHSHQGFFQPLECNPTLQIGPDYRYNDVASDQITATTQPQQVSGFIPGWML* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2061 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso8g2061 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso8g2061 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso8g2061 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso8g2061 251 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g2061 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso8g2061 251 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Gso8g2061 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso8g2061 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso8g2061 251 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g2061 251 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gso8g2061 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Gso8g2061 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso8g2061 251 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 238 - -
Gso8g2061 251 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2061 Gso-Chr8 22011937 22017546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2061 1 251 MADS-box Gene Family AT5G15800 70.722 1.79e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso8g2061 K-box 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2061 K09264 - gmx:100786066 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2238 18 55311800 55317831 Gso8g2061 8 22011937 22017546 GST
Gso13g0348 13 14958204 14964121 Gso8g2061 8 22011937 22017546 PCT
Gso19g0303 19 4523330 4529738 Gso8g2061 8 22011937 22017546 PCT
Gso8g2061 8 22011937 22017546 Gso13g0348 13 14958204 14964121 PCT
Gso8g2061 8 22011937 22017546 Gso19g0303 19 4523330 4529738 PCT