Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2060 ATGATGGGTTCGCTTGCTACACAGAAAGGGTGGAGGAAAGGCCCTTGGACTGGTGAAGAGGACAAGTTGTTAAGTGAATATGTTAGCTTGCATGGGGATGGTAGGTGGAGTTCGGTGGCGAAATTTACAGGATTAAATAGGAGCGGCAAAAGTTGCAGGTTAAGATGGGTAAATTATTTGAGACCCGGCCTCAAGAAAGGTCAATTAACACCGCTGGAAGAAGAAATCATTATTGAACTGCATGCAACCTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGTCGGGTAGAACTGATAACGAGATTAAGAATTACTGGAGAACTCACTTCGGGAAGAGGGAGAGATCCAAACACAAGAAGAAGCTGCAAAGGCCAAAAGTGAAAAGGGTGCTTAAACAATTGAAACACAAGCAACAACAGGAACAACAACCTCAAGAGTATGATATTAAAAGCATCATGTCTCATGAAGAGACCGTAAACGAAACAAAATCCTTTGAGACACAAAATTGTAAGCAACAAGAAATGGGCTTCATGTATCCAACAACAGAGCACCAATATACCGTTCCTAATTCCCTGCATGAGGGATTCTCGTCCACGTGGCAAGACAGTACTCTAGTGGATGATGACTCATGGTTTAGTTTATGGGACTTTGATGAACCACAAGGTTTTTCTGATTATGTTGACCAGTTTAGCAAATGTGCCATGCCAAATCAAGCTACCTTTCGAGTTGGAGGGGATTATTCCATGCAAAATGATGTTAAAACTTCTCGTTTTGATGATGCATACGATAACGACCTCTTCTACGGAAAAGACATGTTTGGATGA 828 0.4167 MMGSLATQKGWRKGPWTGEEDKLLSEYVSLHGDGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGQLTPLEEEIIIELHATLGNKWSTIAKYLSGRTDNEIKNYWRTHFGKRERSKHKKKLQRPKVKRVLKQLKHKQQQEQQPQEYDIKSIMSHEETVNETKSFETQNCKQQEMGFMYPTTEHQYTVPNSLHEGFSSTWQDSTLVDDDSWFSLWDFDEPQGFSDYVDQFSKCAMPNQATFRVGGDYSMQNDVKTSRFDDAYDNDLFYGKDMFG* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2060 275 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gso8g2060 275 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso8g2060 275 Gene3D - 13 65 - -
Gso8g2060 275 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso8g2060 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 227 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso8g2060 275 CDD SANT 15 60 IPR001005 -
Gso8g2060 275 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso8g2060 275 SMART sant 65 113 IPR001005 -
Gso8g2060 275 SMART sant 12 62 IPR001005 -
Gso8g2060 275 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gso8g2060 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Gso8g2060 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Gso8g2060 275 Gene3D - 69 114 - -
Gso8g2060 275 PANTHER MYB TRANSCRIPTION FACTOR 1 227 - -
Gso8g2060 275 CDD SANT 70 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2060 Gso-Chr8 21987223 21988972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2060 10 224 MYB Transcription Factor Family AT3G30210 49.091 2.06e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso8g2060 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2060 K09422 - gmx:100785540 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2237 18 55301167 55302398 Gso8g2060 8 21987223 21988972 GST