Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2052 ATGGCCCAGTCCTTCGGTCAGACCGAGATCAACTGGGACAAGCTAGATAAAACTAGATTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTTTCGGTGGCACTTTATCCCGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAGGATGCTGTAGAGAGAAATGTGTTTTCTGTTGCAAAAGGACTACTTAAAACAGACGGCATCCCTGGTTTGTATAGAGGGTTTGGCACAGTTATCACTGGTGCAATTCCTGCCAGAATCATATTCCTCTCCACTCTAGAGACCACAAAGGTGACTGCCTTCAGAATGCTTGAGCCATTTAGACTATCTGAAACTTCTCAGGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGCTTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTCAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATTCCCAATATAGTGGGGGTCTGGATGTTGTTCGCAAGGTTTTAAGGACTGACGGCATCCGGGGATTGTATCGAGGGTTTGGTCTGTCTGTTATTACTTATGCACCTGCCAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCATTTGGAGATTCCTGGACCATGGTGCCAAATATGATGAAGTTGCACCTAGTATGCAGAAAATTATGTTAGTTCAGGCTACTGGAGGGATTATTGCTGGTGCAACTTCATCCTGCATTACAACCCCATTGGATACCATCAAGACACGATTACAGGTAATGGGACATGAAAATAGAAGCTCTATAAAACAAGTTGCCAAAGATTTAATCAATGAAGATGGTTGGAGAGGCTTTTATAGAGGGTTTGGTCCAAGATTTTTTAGCATGTCAGCATGGGGCACTTCAATGATATTGACTTATGAGTATCTGAGATGA 924 0.4405 MAQSFGQTEINWDKLDKTRFYVVGAGLFTGVSVALYPVSVVKTRLQVATKDAVERNVFSVAKGLLKTDGIPGLYRGFGTVITGAIPARIIFLSTLETTKVTAFRMLEPFRLSETSQAAIANGVAGMTSSLFAQSVFVPIDVVSQKLMVQGYSGHSQYSGGLDVVRKVLRTDGIRGLYRGFGLSVITYAPASAVWWASYGSSQRFIWRFLDHGAKYDEVAPSMQKIMLVQATGGIIAGATSSCITTPLDTIKTRLQVMGHENRSSIKQVAKDLINEDGWRGFYRGFGPRFFSMSAWGTSMILTYEYLR* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2052 307 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 307 IPR018108 -
Gso8g2052 307 Pfam Mitochondrial carrier protein 228 306 IPR018108 -
Gso8g2052 307 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Gso8g2052 307 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
Gso8g2052 307 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Gso8g2052 307 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Gso8g2052 307 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 307 - -
Gso8g2052 307 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Gso8g2052 307 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Gso8g2052 307 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Gso8g2052 307 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Gso8g2052 307 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 307 - -
Gso8g2052 307 Gene3D Mitochondrial carrier domain 21 307 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2052 Gso-Chr8 21816603 21821450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2052 10 307 Chloroplast and Mitochondria Gene Families AT5G15640 74.667 3.75e-168 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2052 K15121 - gmx:100781796 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2221 18 55182346 55186851 Gso8g2052 8 21816603 21821450 GST
Gso13g0356 13 15066574 15072457 Gso8g2052 8 21816603 21821450 PCT
Gso19g0292 19 4315222 4320745 Gso8g2052 8 21816603 21821450 PCT
Gso8g2052 8 21816603 21821450 Gso13g0356 13 15066574 15072457 PCT
Gso8g2052 8 21816603 21821450 Gso19g0292 19 4315222 4320745 PCT