Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2033 ATGGCCTTGCAAACAGCTACTCCTCCAACAACTCCCAGTGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCAGGTTCGGTCTATCGGTTTTACCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAGTGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTGTTGGTGACTGGATGCTTGACTGGCAAGGATAACTTGAGAAGAAAATTTGCACAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTACTGGAGATGGTGATTCAGCTGCTGTTACAGTAACACCAGAACTAGAACCCAGTCATGTTGCTGATTCTTGTGCACCAGAGCCCACAAATTCTCATGTGAACAAAGGTCAAACTGTTGCTGAGAATGCTTATGAGCTATCTAATAATCATGAGAGACAGATACCTGTTGAGAATGAAGGCAATGTAGAATCACATTTTCAGTCAAATGGTAATGATGATTCTCAGGCCACAGAACTGGCTTCATCAGCTCAAGACGATGCTCCAAAGAAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCAGTTCCAACTAAAGTCTATGTGCCTACTAATACACTAAAGTCTGGGCCTAACAAAACTGAGAGCAAGGTAGTTGAGTCAGTAGAATCTACTGAAGTGCCTGAAGCAGCTTTGGAAAGTGTTAGCAACCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAGGGTCACTCCATATACATTCGAAATTTGCCTTTAAATGTGACGGTTGCTCAGTTGGAACTGGAGTTTAAGAAATTTGGGCCCATCAAGCCAGGAGGCATCCAAGTCAGAAATAATAAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCCATGAATAGTGCAATTCAGGCTTCACCTGTTCCTATTGGGGGGCGTCAAGCTGTAGTCGAGATAAAGAGAACCACTACCCGAGTTGGCAGTGGCATTAATGGTACTGGAAGACCTAGGATCCCACCTGGTAGGGGTGGGTTACGAAATGACTCTTTCAGGGGTCGTGGGAATTATGTTGGGGGTCGGGGATACGGTCGAAATGATTATGTAAGCCGTGGCGGGTTTTCTGGTAGGGGTCGTGGTCATGGAGAAGGTTATCACCAAGGGAGAGGGAGAGGCGGCCGGTCAAGTGGACAAAAACAAAATGCTGTTTCCAACTGA 1386 0.4372 MALQTATPPTTPSAQVVGNAFVEQYYHILHHSPGSVYRFYQDSSVISRPDSSGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELPPVTGDGDSAAVTVTPELEPSHVADSCAPEPTNSHVNKGQTVAENAYELSNNHERQIPVENEGNVESHFQSNGNDDSQATELASSAQDDAPKKSYASIVKVQKGSSVPTKVYVPTNTLKSGPNKTESKVVESVESTEVPEAALESVSNPESSDAHEEVEGHSIYIRNLPLNVTVAQLELEFKKFGPIKPGGIQVRNNKQGYCFGFVEFLSLNSMNSAIQASPVPIGGRQAVVEIKRTTTRVGSGINGTGRPRIPPGRGGLRNDSFRGRGNYVGGRGYGRNDYVSRGGFSGRGRGHGEGYHQGRGRGGRSSGQKQNAVSN* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2033 461 MobiDBLite consensus disorder prediction 207 234 - -
Gso8g2033 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 362 IPR000504 GO:0003723
Gso8g2033 461 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Gso8g2033 461 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 460 IPR039539 -
Gso8g2033 461 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Gso8g2033 461 SUPERFAMILY RNA-binding domain, RBD 302 436 IPR035979 GO:0003676
Gso8g2033 461 CDD RRM_SF 305 375 - -
Gso8g2033 461 MobiDBLite consensus disorder prediction 207 233 - -
Gso8g2033 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 379 IPR000504 GO:0003723
Gso8g2033 461 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Gso8g2033 461 MobiDBLite consensus disorder prediction 259 297 - -
Gso8g2033 461 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 460 - -
Gso8g2033 461 Gene3D - 284 385 IPR012677 -
Gso8g2033 461 CDD NTF2 13 135 IPR018222 -
Gso8g2033 461 SMART rrm1_1 304 375 IPR000504 GO:0003723
Gso8g2033 461 Gene3D - 8 137 - -
Gso8g2033 461 MobiDBLite consensus disorder prediction 385 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2033 Gso-Chr8 21391057 21404682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2033 K24983 - gmx:100805494 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2184 18 54848787 54851113 Gso8g2033 8 21391057 21404682 GST