Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2030 ATGTTTTCTTCTTCTTCAGTGATCAAATGGAGGTTCCATCACAAGCCCATGACGCTCGTGCGACTCTTCACACTCGCGTCCCTCCTTATGCTCTCTCTAAACGACGTCGTTTCGTCAGATTCCGACAAATCAGTGCTCCTCGAGCTGAAACACTCGCTCTCCGACCCTTCCGGGCTGCTCGCCACGTGGCAGGGCTCCGACCACTGCGCGTGGTCCGGCGTGCTCTGTGACTCCGCCGCGCGCCGCCGCGTCGTCGCGATCAACGTCACCGGCAACGGAGGTAACCGTAAACCCCCTTCTCCGTGCTCCGATTACGCTCAATTCCCCTTCTATGGGTTCGGAATTAGGAGGAGCTGTGACGGTTTTCGTGGCGCATTGTTCGGTAAGCTTTCTCCGAAGCTCAGTGAACTAGCGGAACTTAGGGTTTTGTCCCTTCCCTTCAATGGCCTCGAGGGAGAGATTCCCGAAGAAATTTGGGGAATGGAGAAGTTGGAGGTGCTTGATCTTGAAGGGAATTTGATAAGTGGGGTTCTACCTATTAGGTTTAATGGATTGAAAAACTTGAGGGTTCTTAATCTAGGGTTTAATAGGTTTGTTGGGGAGATTCCGAGTTCGTTGTCTAATGTTAAGAGTTTGGAGGTTTTGAATTTGGCAGGGAATGGGATTAACGGGTCTGTTTCTGGTTTTGTTGGGAGGTTGAGAGGGGTGTATTTGTCTTATAACTTGCTTGGTGGGGCAATTCCGGAGGAGATTGGGGAACATTGTGGGCAGCTGGAGCATCTTGATTTGTCTGGTAATCTTTTGATGCAGGGAATTCCGGGGAGTTTGGGGAATTGTAGTGAGTTGAGGACGGTTTTGTTGCATTCAAATATATTGGAGGATGTCATTCCTGCTGAGCTTGGGAGGCTTAGGAAGCTTGAGGTGTTGGATGTGTCGAGGAATACGCTCGGTGGGCAGGTGCCTATGGAGCTTGGGAATTGTACTGAGTTGTCTGTGCTGCTTTTGTCTAATCTTTTTAGTTCAGTTCCGGATGTTAATGGTACTTTGGGGGACTCGGGGGTGGAGCAGATGGTTGCTATGAATATTGATGAGTTTAATTACTTTGAAGGTCCGGTTCCTGTTGAGATTATGAACCTTCCTAAGCTGAGACTGCTGTGGGCGCCTAGGGCGAATCTGGAAGGCAGTTTTATGAGCAGTTGGGGCAAGTGTGATAGCTTGGAGATGCTAAATTTGGCTCAAAATGATTTCACTGGGGATTTTCCTAATCAGCTTGGTGGCTGCAAGAATCTCCATTTTCTTGATTTGAGTGCAAATAACCTTACTGGTGTGCTAGCGGAAGAACTTCCTGTCCCTTGTATGACTGTGTTTGATGTTAGTGGGAATGTCTTATCTGGCCCAATTCCTCAATTCTCTGTTGGCAAGTGTGCTTCAGTTCCTTCCTGGAGTGGAAATCTGTTTGAAACAGACGACAGAGCGCTTCCGTACAAATCCTTTTTTGCATCTAAGATTCTTGGGGGGCCCATTTTGGCTTCACTAGGAGAAGTTGGCCGTTCCGTTTTTCACAACTTTGGTCAAAACAACTTTGTTAGCATGGAGTCATTGCCAATAGCACGTGACAAGCTGGGGAAGGGGTTGGTTTATGCAATTCTTGTGGGAGAAAACAAGTTGGCGGGACCTTTTCCTACTAATTTATTCGAGAAATGTGATGGGTTAAATGCATTGCTTTTAAATGTAAGTTATAATATGCTATCCGGTCAGATTCCTTCCAAGTTTGGCAGAATGTGCAGATCATTGAAATTCTTGGATGCATCAGGTAATCAGATTACTGGGCCAATTCCCGTAGGTTTGGGGGATATGGTCTCTCTTGTTTCTCTGAATCTAAGTCGGAACCGTTTACAAGGTCAGATTCTCGTCAGCATTGGCCAGTTGAAGCATCTGAAATTTCTCTCTTTGGCTGATAATAACATAGGTGGTTCCATCCCTACCAGCCTGGGGCGGTTGTACTCTTTAGAAGTCCTAGACCTTTCTTCAAATTCTCTTACAGGTGAAATTCCCAAAGGTATTGAGAACTTGAGAAACCTGACTGATGTTTTGCTTAACAATAACAAACTTTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCAGTACACTGTCAGCATTTAATGTATCTTTCAATAACTTATCTGGATCTTTTCCTTCAAATGGTAACTCAATAAAATGCAGCAATGCTGTGGGGAATCCATTTTTACGTTCTTGCAATGAAGTTTCTCTTGCCGTGCCATCTGCTGACCAAGGGCAGGTTGATAATTCTAGTTCTTACACTGCTGCACCACCAGAAGTTACAGGCAAAAAGGGAGGGAATGGTTTCAATTCTATTGAAATAGCATCTATAACATCTGCATCAGCCATTGTTTCTGTGCTTCTAGCCCTAATCGTCCTTTTTATTTATACACAGAAGTGGAACCCTAGGTCCAGGGTTGTTGGGTCTATGAGAAAAGAAGTTACAGTGTTCACTGATATTGGGGTTCCATTGACATTTGAAAATGTTGTTCGAGCCACAGGAAATTTCAATGCTAGCAACTGCATTGGGAATGGGGGATTTGGAGCAACCTACAAGGCAGAGATAGTACCAGGAAACTTGGTGGCAATAAAACGTCTGGCAGTTGGACGATTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCGTCATCCAAATCTTGTCACTCTGATTGGTTATCATGCCAGCGAGACTGAGATGTTTCTCATATACAACTATTTGCCAGGTGGCAATCTGGAAAAGTTTATCCAAGAGAGATCCACAAGGGCAGTGGATTGGAGGATTCTTCACAAGATTGCATTGGATATAGCCCGTGCACTTGCATACCTGCATGATCAGTGTGTACCCCGAGTTCTACATCGGGATGTCAAGCCCAGTAATATCTTGCTGGATGATGATTATAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACCTCAGAAACTCATGCTACCACTGGTGTAGCAGGGACCTTTGGCTATGTAGCTCCTGAATATGCCATGACTTGTCGTGTTTCCGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTACTCTCTGACAAGAAGGCATTGGATCCTTCATTTTCGTCATATGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCTACTGCGACAAGGCCAGGCAAAAGAGTTCTTTGCCGCCGGCTTATGGGATGCAGGACCTGAAGATGATTTGGTAGAGGTCCTACACCTGGCTGTTGTGTGTACGGTTGACTCTCTCTCAACCAGACCTTCAATGAAACATGTTGTACGGCGGCTTAAGCAACTTCAACCGCCATCATGCTAG 3411 0.4571 MFSSSSVIKWRFHHKPMTLVRLFTLASLLMLSLNDVVSSDSDKSVLLELKHSLSDPSGLLATWQGSDHCAWSGVLCDSAARRRVVAINVTGNGGNRKPPSPCSDYAQFPFYGFGIRRSCDGFRGALFGKLSPKLSELAELRVLSLPFNGLEGEIPEEIWGMEKLEVLDLEGNLISGVLPIRFNGLKNLRVLNLGFNRFVGEIPSSLSNVKSLEVLNLAGNGINGSVSGFVGRLRGVYLSYNLLGGAIPEEIGEHCGQLEHLDLSGNLLMQGIPGSLGNCSELRTVLLHSNILEDVIPAELGRLRKLEVLDVSRNTLGGQVPMELGNCTELSVLLLSNLFSSVPDVNGTLGDSGVEQMVAMNIDEFNYFEGPVPVEIMNLPKLRLLWAPRANLEGSFMSSWGKCDSLEMLNLAQNDFTGDFPNQLGGCKNLHFLDLSANNLTGVLAEELPVPCMTVFDVSGNVLSGPIPQFSVGKCASVPSWSGNLFETDDRALPYKSFFASKILGGPILASLGEVGRSVFHNFGQNNFVSMESLPIARDKLGKGLVYAILVGENKLAGPFPTNLFEKCDGLNALLLNVSYNMLSGQIPSKFGRMCRSLKFLDASGNQITGPIPVGLGDMVSLVSLNLSRNRLQGQILVSIGQLKHLKFLSLADNNIGGSIPTSLGRLYSLEVLDLSSNSLTGEIPKGIENLRNLTDVLLNNNKLSGQIPAGLANVSTLSAFNVSFNNLSGSFPSNGNSIKCSNAVGNPFLRSCNEVSLAVPSADQGQVDNSSSYTAAPPEVTGKKGGNGFNSIEIASITSASAIVSVLLALIVLFIYTQKWNPRSRVVGSMRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEIVPGNLVAIKRLAVGRFQGVQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQAKEFFAAGLWDAGPEDDLVEVLHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2030 1136 SMART LRR_typ_2 230 254 IPR003591 -
Gso8g2030 1136 SMART LRR_typ_2 303 327 IPR003591 -
Gso8g2030 1136 SMART LRR_typ_2 691 714 IPR003591 -
Gso8g2030 1136 SMART LRR_typ_2 619 643 IPR003591 -
Gso8g2030 1136 SMART LRR_typ_2 161 184 IPR003591 -
Gso8g2030 1136 SMART LRR_typ_2 667 690 IPR003591 -
Gso8g2030 1136 SMART LRR_typ_2 185 209 IPR003591 -
Gso8g2030 1136 SMART LRR_typ_2 255 279 IPR003591 -
Gso8g2030 1136 SUPERFAMILY L domain-like 366 751 - -
Gso8g2030 1136 SMART serkin_6 857 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2030 1136 Gene3D Ribonuclease Inhibitor 233 354 IPR032675 -
Gso8g2030 1136 Gene3D Ribonuclease Inhibitor 355 542 IPR032675 -
Gso8g2030 1136 Gene3D Ribonuclease Inhibitor 543 636 IPR032675 -
Gso8g2030 1136 Pfam Leucine Rich Repeat 257 279 IPR001611 GO:0005515
Gso8g2030 1136 Pfam Protein kinase domain 860 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2030 1136 Pfam Leucine rich repeat 163 222 IPR001611 GO:0005515
Gso8g2030 1136 Pfam Leucine rich repeat 645 704 IPR001611 GO:0005515
Gso8g2030 1136 SUPERFAMILY Protein kinase-like (PK-like) 841 1128 IPR011009 -
Gso8g2030 1136 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 16 1135 - -
Gso8g2030 1136 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 16 1135 - -
Gso8g2030 1136 SUPERFAMILY L domain-like 40 338 - -
Gso8g2030 1136 ProSiteProfiles Protein kinase domain profile. 857 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2030 1136 PRINTS Leucine-rich repeat signature 430 443 - -
Gso8g2030 1136 PRINTS Leucine-rich repeat signature 667 680 - -
Gso8g2030 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672|GO:0006468
Gso8g2030 1136 ProSitePatterns Protein kinases ATP-binding region signature. 863 885 IPR017441 GO:0005524
Gso8g2030 1136 Gene3D Ribonuclease Inhibitor 38 232 IPR032675 -
Gso8g2030 1136 Gene3D Phosphorylase Kinase; domain 1 820 932 - -
Gso8g2030 1136 Gene3D Transferase(Phosphotransferase) domain 1 933 1133 - -
Gso8g2030 1136 Gene3D Ribonuclease Inhibitor 637 755 IPR032675 -
Gso8g2030 1136 Pfam Leucine rich repeat N-terminal domain 40 77 IPR013210 -
Gso8g2030 1136 CDD STKc_IRAK 863 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2030 Gso-Chr8 21331156 21335286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2030 36 1136 Receptor kinase-like Gene Family AT3G02130 63.417 0.0 1330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Gso8g2030 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2030 - - gmx:100803891 2186.38