Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2023 ATGGTTTCAGCAATGGCGTTCTTAAATAAAATTGGAAATCTGGTCAAGAATTCTGCTGTCAAGCACATCAATCAAGATTTTTCAGTGTCTACCCCATCACTTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCTTACAGCACTGATGATATGAGTTTGCGAGAGTCTTTTGCTCGCTATGGAGAAGTAATAGATGTCAAGGTCATTATGGATCGTGAAACTGGCAGGTCAAGAGGTTTTGGCTTCATAACTTTTGCAACAAGTGAGGATGCATCTTATGCCATTCAGGGCATGGATGGTCAGGATCTTCATGGTCGCAGGATACGGGTGAATTATGCTACAGAAAGGTCACGTCCAGGGTTTGGTGGTGATGGTGGATATAGGGGCAGTGGTGGCAGCGATGGCTACAATAGGGGTGGAAACTATGGAAGTGGCAATTATAATGTTACAAGCAGCTATAGTGATGGCAATGCTGAAACTAGTTACACTAGTGGTGCTAATGCTGGTAATTACCAATTCAATGAAAATTCTGGTGGAGTTTTTGGCTCAGCTAGCGGTGAATTCAGCAGCAACCAAAATGACGCAACAGGTGCAGACAATGATGAATTCATTGAGCCACTTGAAGACAATGTGAGGGAGAACAATGATGAACCTACTGACTACGCTCAGAACCGCTGA 699 0.432 MVSAMAFLNKIGNLVKNSAVKHINQDFSVSTPSLFQAIRSMSSAKLFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASYAIQGMDGQDLHGRRIRVNYATERSRPGFGGDGGYRGSGGSDGYNRGGNYGSGNYNVTSSYSDGNAETSYTSGANAGNYQFNENSGGVFGSASGEFSSNQNDATGADNDEFIEPLEDNVRENNDEPTDYAQNR* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2023 232 Gene3D - 30 159 IPR012677 -
Gso8g2023 232 SUPERFAMILY RNA-binding domain, RBD 28 152 IPR035979 GO:0003676
Gso8g2023 232 MobiDBLite consensus disorder prediction 189 205 - -
Gso8g2023 232 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 153 232 - -
Gso8g2023 232 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 5 153 - -
Gso8g2023 232 MobiDBLite consensus disorder prediction 212 226 - -
Gso8g2023 232 MobiDBLite consensus disorder prediction 189 232 - -
Gso8g2023 232 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 153 232 - -
Gso8g2023 232 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 5 153 - -
Gso8g2023 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Gso8g2023 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 116 IPR000504 GO:0003723
Gso8g2023 232 SMART rrm1_1 45 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2023 Gso-Chr8 21216662 21219763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2023 46 124 Eukaryotic Initiation Factors Gene Family AT1G49760 32.911 8.95e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2023 K12741 - gmx:100818300 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2175 18 54758623 54761692 Gso8g2023 8 21216662 21219763 GST