Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2011 ATGGCTTTTCAAGTAAGATACGTTTACCTTGTGGTTGTTTTAGATGTTATTGGCGTGGTTGATGAAGTGGTATTCCGATATGTGTCATCCAAAAATACGAGGGTTGTTTTGAATTTAAAGGATTTAAGTGGACAGGTGCTATCCTATACACTCTGGGAAAATTACTGCCTACAGTTTTTGTCTTATTTGAATGATATTGAAGATGAAAGACTGATCGTTATTCTCTTGACTCATGCTAGGATTAAGGAAGCACAGGGATCATATCCGGCATCGGTCAGTAATTCTTTCAAGGCGTCTAAACTCATGATCAATGACCTCATGCTGGAAATCCAAGAATTTAGAGAGAGTCTTTTAGATTTAGGGATCGAGGTTAGATCAATTTTGACGCCTATTGGACAAGGGAGTTCACAGGTTTCAAGGTCATCTCAATTATCATCAAAAGATGCGTTTCTGTCAAATACTGAAGAGTTTGTTTGTGTTACTGTCGCCAAGATTACAACCATAGTGATGGACAACTATTCATGGTGCTATTTGGCTTGTGGTCAATGTTATAAAAAAACTGGCATGCAAACTGTGTCGTTCACATGTCTGTGTGGCAAAGAGAATGATCAACCTGAACTGAGGTATCGGGTTGAGGTGATTGTTAATCACAAGGGTGAACAAACCAAATTTTTGATCTGGGATTGTGAATGTGCACAGTTAATTGGTCAGTCCACGGATGAAGTCAACAGGTTCAAAATAGAAGATGGGGACGTTGATTTAAATGCCTCTCCTCAAGCACTAGATAGGCTATTGGGTTGTTTCCTTGCATTCAGAGTGAAGGTGCAACCAACGTTCAGGAATTCTGTTGTTCTTAAATATTCAAATGAATCAGACTTGATCAATGTTGTGCTAGATATGATTCCCGATAGTGAGCCATGTTGCAAGATTGAGAATTCAATACTTGAGTCGACCGATCCTACAGTGCTTGAATCTCAATCTTTGTCTATTACCGCTGATCATGATGGGCCAATGGTTGGCTCAAGTGAGCCTATAGAGTTTGAATCTCAATCTGTGTCTATTACCGGGGATCATGACCCTCTTCTCAAGATTCCATTGACACCAATTAAGCGCGTATCTTCTGATGAGTTGGATAATGAGGGAAAAAACTTTCAGATTTCACCTGCTGAAGTTTCCTCGAACAAATTAGCCAGGCATTCTTAG 1203 0.3973 MAFQVRYVYLVVVLDVIGVVDEVVFRYVSSKNTRVVLNLKDLSGQVLSYTLWENYCLQFLSYLNDIEDERLIVILLTHARIKEAQGSYPASVSNSFKASKLMINDLMLEIQEFRESLLDLGIEVRSILTPIGQGSSQVSRSSQLSSKDAFLSNTEEFVCVTVAKITTIVMDNYSWCYLACGQCYKKTGMQTVSFTCLCGKENDQPELRYRVEVIVNHKGEQTKFLIWDCECAQLIGQSTDEVNRFKIEDGDVDLNASPQALDRLLGCFLAFRVKVQPTFRNSVVLKYSNESDLINVVLDMIPDSEPCCKIENSILESTDPTVLESQSLSITADHDGPMVGSSEPIEFESQSVSITGDHDPLLKIPLTPIKRVSSDELDNEGKNFQISPAEVSSNKLARHS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2011 400 Gene3D - 130 295 IPR012340 -
Gso8g2011 400 PANTHER REPLICATION FACTOR A 1, RFA1 15 229 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso8g2011 400 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 15 229 - -
Gso8g2011 400 Pfam Replication factor-A C terminal domain 163 275 IPR013955 -
Gso8g2011 400 MobiDBLite consensus disorder prediction 375 400 - -
Gso8g2011 400 MobiDBLite consensus disorder prediction 379 394 - -
Gso8g2011 400 CDD RPA1_DBD_B_like 25 117 - -
Gso8g2011 400 Gene3D - 9 122 IPR012340 -
Gso8g2011 400 SUPERFAMILY Nucleic acid-binding proteins 153 281 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2011 Gso-Chr8 21042022 21044035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2011 12 219 Core DNA Replication Machinery Family AT2G06510 28.261 1.81e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2011 - - gmx:102670354 752.666