Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2007 ATGGTCATGGGTAGGTCTCACTGTTTGGTTTCTTTGGCCTTTTTAATGGTTCTCTTTGTACCAGCCTTGTCACATGGCAGTCGTCATCGAAGAAGTGGATGGCATCTAGCCCATGCAACTTTCTATGGAGACATGCAAGGTGGAGACACCATGCAGGGTGCTTGTGGCTATGGTGATCTCTACCAGCAAGGTTATGGGCTAGAAACCACAGCCCTAAGCACAGCTCTATTCAACAATGGGCTCACTTGTGGTGCATGTTTTGAGATCATGTGTGTGAACGAGCCCCAATGGTGCATTCCCAACGCAGGCTCAATCAAAGTGACCGCAACAAATTTCTGCCCCCCTAATTACAACCCACCTAATTTCGACCATTGGTGCAACCCTCCACAAGAACACTTCGACTTGTCCATGAAAATGTTCACCAAAATTGCCATATACAGAGCAGGGATCATCCCAGTCATGTATCGCCGTGTCCCATGCAACAAAAGTGGCGGTGTCAAGTTTGAGATGAAAGGGAACCCTTATTGGTTGTTGGTTTTGTTGTACAATGTTGCCAGTGCTGGTGATGTTACTCAAGTGAGCATCAAAGGGTCTTCAAACACTGGCTGGAAATCTATGTCACGTGTTTGGGGACAGAATTGGGTTACTGGGTCTAATTTGGTAGGACAAGCCTTGTCATTTCAGGTCACTACTAGTGATGGTAAAATGATGGAGTTTGATAATGTTGCTCCTTCTAATTGGCAATTTGGACAGAGCTACGAGACCTACCAAAACTTTTAG 780 0.4577 MVMGRSHCLVSLAFLMVLFVPALSHGSRHRRSGWHLAHATFYGDMQGGDTMQGACGYGDLYQQGYGLETTALSTALFNNGLTCGACFEIMCVNEPQWCIPNAGSIKVTATNFCPPNYNPPNFDHWCNPPQEHFDLSMKMFTKIAIYRAGIIPVMYRRVPCNKSGGVKFEMKGNPYWLLVLLYNVASAGDVTQVSIKGSSNTGWKSMSRVWGQNWVTGSNLVGQALSFQVTTSDGKMMEFDNVAPSNWQFGQSYETYQNF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2007 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Gso8g2007 259 Gene3D - 162 259 IPR036749 -
Gso8g2007 259 Gene3D - 19 161 IPR036908 -
Gso8g2007 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Gso8g2007 259 PANTHER EXPANSIN-A15 23 255 IPR002963 GO:0009664
Gso8g2007 259 PANTHER EXPANSIN 23 255 - -
Gso8g2007 259 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Gso8g2007 259 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Gso8g2007 259 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Gso8g2007 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Gso8g2007 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Gso8g2007 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Gso8g2007 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Gso8g2007 259 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Gso8g2007 259 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Gso8g2007 259 SMART dpbb_1 69 155 IPR007112 -
Gso8g2007 259 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Gso8g2007 259 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Gso8g2007 259 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Gso8g2007 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Gso8g2007 259 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Gso8g2007 259 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Gso8g2007 259 Pfam Expansin C-terminal domain 166 244 IPR007117 -
Gso8g2007 259 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Gso8g2007 259 Pfam Lytic transglycolase 69 155 IPR009009 -
Gso8g2007 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2007 Gso-Chr8 20869841 20871634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2007 17 259 Expansin Gene Family AT5G39270 60.905 1.21e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2007 - - gmx:100789595 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2164 18 54688410 54690209 Gso8g2007 8 20869841 20871634 GST