Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2004 ATGGAATACAGCAATTGGGCTGAATCGCTTCAAACCGAAACCCCACTCCCCTCTTTCCCACAACCCTCATCCTCATATCCTCCTACCTATTACCCCTCTTACCCTCAAAACCCTAACCCCTCTTCTTCTTCTTCTTCTTCTCTTCCCATCAACCCTCCCGGGGTTGATCCCCAAACACCATTGAACCCTATTAGCTATGCGGCTCATGAACCCGTTCCCGCTTTGATCTACGCTCAGAGACTTGTTGGGGATAATTCGTCTTCTGGGTATTGCTTGGACCAGAATTGGGCTGCTAGAGATGCTGTTAGGCAATTTGGTACTGACCCTACTCTCTATGCACCTGGCATCTCTTTGCCATCCAATGGCTCAGAACAGTTGGCTATGGCAAATCCTAGTAGCTCTCTGTGGTGGACAAATACCACAACTCTACCTCATGTCAATGGAATACTGAAGAAGAACCAAAAGAAAGCTAAAACTAAGATTGTGCAACCTGCATTTTGTGAAGTTTGCAAGATAGAATGCACCAGCAAGGACGTTTTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACGTGGAGAAATTAAGGGAATCATTGACACCTACCCAAGTTCAACCATCTGTGTCATCTAAGCCTTTAATAGGACCCCAATTACCGGATGATAAGAGCAAGTCCACAAGTGGGAATAAGAGTAAGAGAAAAAAAGTTGAAACTGCAGAGGATTTGGAGAAAAAGAAAATGAAAGTTCTTGAGGGTGGGGCAGCAGCTTCAGCAGTTAAGATATGTGCTATATGTAACGTGGTGTGTAATAGTGAGACAGTTTATAACTATCATCTTGCAGGACAAAAGCATGCTGCTATGCTGAAGAAAGCATCGGGCCATATGCAATCCAGTGCCAGTTGA 906 0.4448 MEYSNWAESLQTETPLPSFPQPSSSYPPTYYPSYPQNPNPSSSSSSSLPINPPGVDPQTPLNPISYAAHEPVPALIYAQRLVGDNSSSGYCLDQNWAARDAVRQFGTDPTLYAPGISLPSNGSEQLAMANPSSSLWWTNTTTLPHVNGILKKNQKKAKTKIVQPAFCEVCKIECTSKDVLDQHKLGKKHKKNVEKLRESLTPTQVQPSVSSKPLIGPQLPDDKSKSTSGNKSKRKKVETAEDLEKKKMKVLEGGAAASAVKICAICNVVCNSETVYNYHLAGQKHAAMLKKASGHMQSSAS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2004 301 SMART c2h2final6 261 285 IPR013087 -
Gso8g2004 301 SMART c2h2final6 165 189 IPR013087 -
Gso8g2004 301 MobiDBLite consensus disorder prediction 36 52 - -
Gso8g2004 301 SUPERFAMILY beta-beta-alpha zinc fingers 260 293 IPR036236 -
Gso8g2004 301 MobiDBLite consensus disorder prediction 226 240 - -
Gso8g2004 301 SMART ZnF_U1_5 162 196 IPR003604 GO:0003676|GO:0008270
Gso8g2004 301 SMART ZnF_U1_5 258 292 IPR003604 GO:0003676|GO:0008270
Gso8g2004 301 PANTHER - 11 300 - -
Gso8g2004 301 MobiDBLite consensus disorder prediction 1 19 - -
Gso8g2004 301 MobiDBLite consensus disorder prediction 20 35 - -
Gso8g2004 301 Gene3D Classic Zinc Finger 222 292 - -
Gso8g2004 301 Gene3D Classic Zinc Finger 149 196 - -
Gso8g2004 301 SUPERFAMILY beta-beta-alpha zinc fingers 159 197 IPR036236 -
Gso8g2004 301 Pfam Zinc-finger of C2H2 type 262 285 - -
Gso8g2004 301 Pfam Zinc-finger of C2H2 type 166 189 - -
Gso8g2004 301 MobiDBLite consensus disorder prediction 198 213 - -
Gso8g2004 301 MobiDBLite consensus disorder prediction 1 64 - -
Gso8g2004 301 MobiDBLite consensus disorder prediction 186 240 - -
Gso8g2004 301 PANTHER ZINC FINGER RNA-BINDING PROTEIN 11 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2004 Gso-Chr8 20826651 20829121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2004 161 299 C2H2 Transcription Factor Family AT5G61190 34.532 1.68e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2004 - - gmx:100814580 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2160 18 54661909 54664956 Gso8g2004 8 20826651 20829121 GST