Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso8g1994 | ATGGGGTTGAAATTTACAAAGCAGGGACCACCTAAAATTGAGGATCCAAGTTTACATAATCAAATGATCAATTACCTTACCAAGAATTTTATTCGCAACTTGGTATCTAAGCAACGAAGAAGAATGCTTATTGCTGGTTATGATCTTGACATGTCATATATCACAGACCGAGTATTAGCAATGTCATTTCCGGCACAACGTATGCGAGCAATGTATCGAAATCCTCTATGGCAAGTCAAATCTGTGTTGGACATGAGACATTATGACCATTATAAGGCGGGAAAGGGTAGAACTGGATTAATGGTGAGTGCATACCTAACTTATTGCGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGATAGACGGACAACCAATAATGAAGGAGTATCAATACCAAGCCAGCGTCGATACGTAGCATACTGGGATAGTCTACTTTCAAATTCTGTCCCAAGGGGAACTGGAAATGGACCGACAAAGGTGAACTTGCCTCAGCCATGTGGCAGAGAATTACGGCGAATCCGGCTTTATGATACAATCAACATTGACACAATATTCTTTGTTATCTCAGAGCTACACGAGATTCCTAATGAGGTGTATCGTCCACCAGTGGAAGCTTATCGTGGCTGCTGTAGACAGATTAAGAAAGGGTATCAGAGAAATAATAGTCCTCGCTATTATATCTCTATTCTTGAAGGTGATAAAGATGGAAATCAATCAGAAACAGAAGAACCTCGCATTGTAGTTCAAATGGACACAGAGAGTCCAGCAATATACCAAAAATCATGTTTGGACCATTATTTTGATAAACCTATACAAGTAACAGGAGATGTACGGCTCACATTCTATGAGAAAATGATAGGAGGGCGCCTGTTCTACTGCTGTTTTAATACAGCTTTTATTAGGAACAGCTTACTACAGCTCCCAATACAAGAGTTGGACAAAGTTGGGAAGAAAGGAACATCAATATGTGGCCCTGACTTCTGCTTAGAATTATTGTTTGGTCCTGCTAATGCAGGATACTCATCGTCAAGTATATCCAATGATGAATATTCTAATGATGATTCTTTATAA | 1077 | 0.3965 | MGLKFTKQGPPKIEDPSLHNQMINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPAQRMRAMYRNPLWQVKSVLDMRHYDHYKAGKGRTGLMVSAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVAYWDSLLSNSVPRGTGNGPTKVNLPQPCGRELRRIRLYDTINIDTIFFVISELHEIPNEVYRPPVEAYRGCCRQIKKGYQRNNSPRYYISILEGDKDGNQSETEEPRIVVQMDTESPAIYQKSCLDHYFDKPIQVTGDVRLTFYEKMIGGRLFYCCFNTAFIRNSLLQLPIQELDKVGKKGTSICGPDFCLELLFGPANAGYSSSSISNDEYSNDDSL* | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso8g1994 | 358 | Gene3D | Protein tyrosine phosphatase superfamily | 92 | 155 | IPR029021 | - | |
| Gso8g1994 | 358 | PANTHER | BNAC03G16750D PROTEIN | 93 | 350 | - | - | |
| Gso8g1994 | 358 | PANTHER | BNAC03G16750D PROTEIN | 1 | 92 | - | - | |
| Gso8g1994 | 358 | Pfam | C2 domain of PTEN tumour-suppressor protein | 251 | 335 | IPR014020 | - | |
| Gso8g1994 | 358 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 93 | 350 | - | - | |
| Gso8g1994 | 358 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 92 | - | - | |
| Gso8g1994 | 358 | Gene3D | - | 211 | 340 | - | - | |
| Gso8g1994 | 358 | ProSiteProfiles | C2 tensin-type domain profile. | 183 | 338 | IPR014020 | - | |
| Gso8g1994 | 358 | SMART | PTEN_C2_2 | 165 | 337 | IPR014020 | - | |
| Gso8g1994 | 358 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 40 | 150 | IPR029023 | - | |
| Gso8g1994 | 358 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 46 | 150 | IPR029021 | - | |
| Gso8g1994 | 358 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 242 | 337 | IPR035892 | - | |
| Gso8g1994 | 358 | Gene3D | Protein tyrosine phosphatase superfamily | 26 | 91 | IPR029021 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso8g1994 | Gso-Chr8 | 20640272 | 20645523 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso8g1994 | 1 | 93 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 64.583 | 3.38e-33 | 125 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso8g1994 | K01110 | - | gmx:100809938 | 546.199 |