Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1988 ATGTCCACTCCCAACACCGATTCCGGCACGGCGCCGCCACCGCGCCCCACCATCACGCTCCCTCCGCGCCCCTCCGCCGAGGCCTTCTTCTCCGCCGCCGCCGGCGCCAGCCCCGGCCCCATGACCCTCGTCTCCAGCTTCTTCGGCTCCGACGCCGCCGCCGACTGCCGCTCCTTCTCTCAGCTCCTCGCTGGTGCCATGGCCTCCCCGATGGCCTTCTCCGCCGCTGCCGCAGCCGCCGACAACTCCGGCAAGGACGACGATGGGCCCCACAAGGGGTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTCTTCACTGTGCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAACTCCCCTGGCTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCCCACCAACAGGCTTTAGCGCAGGTTACAGCTCAAGCTGTCCTAGCTCAATCCCATATGCACATGCAAGCTGATTATCAGATGCCTGCGGTAACAGCTCCAACCGAACCACCTGTACGGCAGCTGTCTTTTGCTCTAAATGAAGCTTCGGAGCAGCAAGTGGTATCATGTGTATCATCTGTATCAGAACCTAGAAATGCTCAACTCGAAGCACCGGAACTCTCACAGGCTGATAAGAAATATCAACCATCATCCCAGGCCATTGACAAACCTGCAGATGATGGCTACAACTGGCGTAAGTATGGGCAGAAGCAGGTTAAGGGTAGTGAGTATCCACGAAGCTATTACAAGTGCACACATCTGAATTGTGTTGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAACCATGAAAAGCCTCAGGCAAATAGGCGTGCCAAAGATAATAGTGATTCAAATGGAAATGTAACTGTTCAGCCCAAATCTGAGTCAAACTCACAAGGTTGGGTTGGACAATTAAACAAGTTTAGTGAAAAAATTCCTGATTCTTCAGTTGCTAAAAGTGACCAGACCTCCAATCAAGGGGCTCCTCCTAGGCAACTACTACCTGGGTCAAGTGAGAGTGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGCAGATGATGGCGAGCCAAACCCTAAGAGAAGGAATACTGATGTTGGGGTTTCTGAAGTACCTCTGTCTCAGAAGACTGTCACAGAACCCAAAATCATCGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAATATGGTCAGAAAGTGGTAAAGGGAAACCCTCATCCAAGGAGTTATTACAAATGCACTAGTGCAGGATGCAACGTGCGCAAGCATGTTGAGAGAGCTTCAATGGACCCCAAAGCTGTCATAACCACGTATGAGGGTAAACATAATCATGATGTGCCTGCTGCTAGAAACAGCAGCCACAACACAGCTAGTAGCAATTCAATGCCATTAAAACCACATAATGTGGTGCCGGAGAAACATCCTTTGCTCAAGGATATGGATTTTGGAAGTACTGACCAAAGACCTGTACATTTGCGTTTGAAAGAAGAGCAAATCATAGTATAA 1572 0.5025 MSTPNTDSGTAPPPRPTITLPPRPSAEAFFSAAAGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSAAAAAADNSGKDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMPAVTAPTEPPVRQLSFALNEASEQQVVSCVSSVSEPRNAQLEAPELSQADKKYQPSSQAIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAPDGHITEIIYKGQHNHEKPQANRRAKDNSDSNGNVTVQPKSESNSQGWVGQLNKFSEKIPDSSVAKSDQTSNQGAPPRQLLPGSSESEEVGDVDNREEADDGEPNPKRRNTDVGVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASMDPKAVITTYEGKHNHDVPAARNSSHNTASSNSMPLKPHNVVPEKHPLLKDMDFGSTDQRPVHLRLKEEQIIV* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1988 523 MobiDBLite consensus disorder prediction 277 315 - -
Gso8g1988 523 Pfam WRKY DNA -binding domain 410 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 Pfam WRKY DNA -binding domain 229 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 MobiDBLite consensus disorder prediction 465 488 - -
Gso8g1988 523 ProSiteProfiles WRKY domain profile. 223 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 522 IPR044810 GO:0003700
Gso8g1988 523 MobiDBLite consensus disorder prediction 277 293 - -
Gso8g1988 523 PANTHER WRKY PROTEIN 10 522 - -
Gso8g1988 523 Gene3D WRKY domain 394 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 Gene3D WRKY domain 214 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 SUPERFAMILY WRKY DNA-binding domain 227 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 SMART WRKY_cls 228 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 SMART WRKY_cls 409 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 MobiDBLite consensus disorder prediction 294 315 - -
Gso8g1988 523 MobiDBLite consensus disorder prediction 1 24 - -
Gso8g1988 523 MobiDBLite consensus disorder prediction 327 387 - -
Gso8g1988 523 ProSiteProfiles WRKY domain profile. 404 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 MobiDBLite consensus disorder prediction 327 348 - -
Gso8g1988 523 SUPERFAMILY WRKY DNA-binding domain 401 469 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso8g1988 523 MobiDBLite consensus disorder prediction 202 234 - -
Gso8g1988 523 MobiDBLite consensus disorder prediction 471 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1988 Gso-Chr8 20556950 20561772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1988 15 521 WRKY Transcription Factor Family AT2G03340 52.158 1.17e-146 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso8g1988 WRKY 1.6e-25 CL0274