LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g1987	ATGGGTTGCGCGAGCTCGAAGAAGACGGTTGCCGGAGCCGGCGGCTCTACCCCGGAGGGGCCATGCATGGTGCGTTCGAGTTCGCGAAGACAGGGCAATAATGGGTCGGGGCGGAACCGAAAAGGTGTCGCGGCGGAGGCGCGTGAGGGGGAGGCGCGTGAGTGGAGCAAGGGGAGCTTGAGAGGGGGGACTGGGTCGGTGTCTTTAAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCGGCTGGGTGGCCACCTTGGCTTACTTCTGTTGCTGGGGAAGCCATTCAAGGGTGGGTCCCACTCAAAACAGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTCCAAGCACGCGAAGTTGAAACTGGAAGGATGGTTGCCCTGAAGAAGGTGCGCTTTGACAAACTTCAAGCTGAAAGCATTAGGTTCATGGCAAGAGAAATACTAATTCTCCGCACACTGGACCACCCAAACATCATGAAATTGGAAGGTATAATCACTTCACAACTATCAAATAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGTCTAGTAGCTTCTCCTGACATAAAGTTCACGGACTCACAGATTAAGTGTTACATGAGGCAGCTATTAAGTGGAATTGAGCATTGTCACCTTAAAGGTATTATGCATCGAGACATTAAAGTATCTAATATATTAGTGAACAATGAAGGTGTTCTCAAGATAGCAGATTTTGGATTAGCCAATACCCTTAGTCCAAATAGTAAGCAACCCTTAACAAGTCGTGTGGTGACTCTATGGTATCGTCCTCCTGAGCTCTTGTTGGGATCGACGAGTTATGGAGTTTCAGTGGATCTATGGAGTGTTGGCTGTGTATTTGCTGAACTTTTTCTAGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGAATAAGCTTCCTCTGGCCACAATGTTTAAGCCTAAGGCTAATTACGAAACCTCTCTTCAGGAGAGGTGTAGAGGCTTTCCTGCAACTGCTGTAAACCTACTAGAGACTTTACTTTCCATTGATCCTTCCAAGCGCAGGACTGCCTCCTCTGCTCTCATGTCCGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCGTCACACCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAAAAATCGGGAAGAAGTGCGCAGGAAAAAGAATGGAGGTAAAGTGAGAGAGGCTGTGACATCAAAAAGGCAAAGACAAGTCCACAAAGTTTCCCATGACCATATCAATTTCAACCAACCAGCTTTGAAAGAGAATGTTTCTCAAAATCCTGGTACAAATGATGGTAGGGCATATGTTACAAAAGGAAAAGTAGCAGGAGCTATGCATAAAGAGCAACCAAAGCCTTCATATGATGCAAAGTCAGAGGCTGCCCAAGTGGTGAATGGTTGCAATGGATACAGTGTATACTCAGGACCGGCACCAATCTCGGGATCTAGTGGCTTTACATGGGCTAAAAGGAGAAAACCAAAAGCTTCATCCATATTGTCAGATGGCTCAAGAAGCAAAGTCAGTGCTCTGGATCCAACCTTTGCAAAAGGTACATATGATTTAACAGAACATGGGATAGAAGTTTCAGAAAGGAAACATAGTTATAACACAAGCCATCGGGATGAGACTTCCAGCTATGTATCAAAAAAGTACCAGGCTCCTCTCGTTCAACAAAAATCATTCGATGTAGCTGATACATACAACTCAAATTATTACATGGACTTTGATTTCACAGATAAAATGGATGCTTTGATAGACACTCAGGGCCACAGAAAACATGATGAGCCAGTGGAGCAATCAGTACCGAATATGATCCCATCAAATAAAAATGAGGAGTTGTTGCATTGGAATGAAAATGATATGCGACAATCTCTTCGTAAATCAAGGTTGGGAAGAGAACACTCTCAAGAATGA	2028	0.4467	MGCASSKKTVAGAGGSTPEGPCMVRSSSRRQGNNGSGRNRKGVAAEAREGEAREWSKGSLRGGTGSVSLRLSCRFVEAEQNAAGWPPWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSSVFQAREVETGRMVALKKVRFDKLQAESIRFMAREILILRTLDHPNIMKLEGIITSQLSNSIYLVFEYMEHDLAGLVASPDIKFTDSQIKCYMRQLLSGIEHCHLKGIMHRDIKVSNILVNNEGVLKIADFGLANTLSPNSKQPLTSRVVTLWYRPPELLLGSTSYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKNKLPLATMFKPKANYETSLQERCRGFPATAVNLLETLLSIDPSKRRTASSALMSEYFSTKPYACNPSHLPKYPPSKEMDAKNREEVRRKKNGGKVREAVTSKRQRQVHKVSHDHINFNQPALKENVSQNPGTNDGRAYVTKGKVAGAMHKEQPKPSYDAKSEAAQVVNGCNGYSVYSGPAPISGSSGFTWAKRRKPKASSILSDGSRSKVSALDPTFAKGTYDLTEHGIEVSERKHSYNTSHRDETSSYVSKKYQAPLVQQKSFDVADTYNSNYYMDFDFTDKMDALIDTQGHRKHDEPVEQSVPNMIPSNKNEELLHWNENDMRQSLRKSRLGREHSQE*	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g1987	675	MobiDBLite	consensus disorder prediction	1	62	-	-
	Gso8g1987	675	SMART	serkin_6	108	392	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso8g1987	675	MobiDBLite	consensus disorder prediction	42	56	-	-
	Gso8g1987	675	MobiDBLite	consensus disorder prediction	656	675	-	-
	Gso8g1987	675	Pfam	Protein kinase domain	108	392	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso8g1987	675	CDD	STKc_CDK9_like	108	392	-	-
	Gso8g1987	675	PANTHER	CELL DIVISION PROTEIN KINASE	40	564	-	-
	Gso8g1987	675	PANTHER	CYCLIN-DEPENDENT KINASE	40	564	-	-
	Gso8g1987	675	ProSitePatterns	Protein kinases ATP-binding region signature.	114	137	IPR017441	GO:0005524
	Gso8g1987	675	MobiDBLite	consensus disorder prediction	409	430	-	-
	Gso8g1987	675	MobiDBLite	consensus disorder prediction	627	651	-	-
	Gso8g1987	675	ProSiteProfiles	Protein kinase domain profile.	108	392	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso8g1987	675	MobiDBLite	consensus disorder prediction	406	430	-	-
	Gso8g1987	675	Gene3D	Transferase(Phosphotransferase) domain 1	191	432	-	-
	Gso8g1987	675	MobiDBLite	consensus disorder prediction	21	38	-	-
	Gso8g1987	675	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	228	240	IPR008271	GO:0004672\|GO:0006468
	Gso8g1987	675	Gene3D	Phosphorylase Kinase; domain 1	95	190	-	-
	Gso8g1987	675	SUPERFAMILY	Protein kinase-like (PK-like)	102	397	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g1987	Gso-Chr8	20544351	20554812	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso8g1987	100	434	Core Cell Cycle Gene Families	AT5G10270	46.571	2.86e-108	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Gso8g1987		Pkinase	1.5e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g1987	-		-	gmx:100781059	1334.7