Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1984 ATGCACCTACTCATATCTGATTTAGAAATGGATGGACCGGCTGGTCGAGGTGGTGCTGGACTGGACATGTTTCTGCCAAATTATAAATTGGGAAAAACACTTGGGATTGGATCTTTTGGCAAGGTCAAAATTGCAGAACATGTATTGACTGGCCATAAGGTTGCGATCAAGATTCTTAACCGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTATTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCAACTGACATATATTTTGTCATGGAGTATGTGAAGTCTGGAGAGCTGTTCGATTACATTGTAGAGAAGGGCAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGCCACTTTCTTAAAACAAGTTGTGGAAGCCCTAACTATGCAGCTCCTGAGGTTATCTCTGGGAAACTGTATGCTGGACCTGAAGTGGATGTCTGGAGCTGTGGTGTAATTTTATATGCGCTTCTTTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGCGGTATTTACACTCTTCCCAGTCATCTATCTCCCAATGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGACTTCCGCGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAGGCCAAAAAGATTGACGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACCATGGATTCCGGTTTTAATCAAATGCAAAACTCTTCAGTTGTTGGAAACCGTTTTCCAGGCTACTTGGAGTATCCGGGAGTAGGATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGTCACTACAACATGAAGTGTAGGTGGGTTGCTGGCATTCCTGGTCATCACGAAGGAATGGTTAACAATAATGTAGATAATAATAATTTCTTTGGAGATGATTCCAACATCATTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTATGTGCTGCTTTCCTTGCACAGCTTCGGGTCCTCTAG 1560 0.4205 MHLLISDLEMDGPAGRGGAGLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYFVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPNARDLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVKMGFDRNQLVESLGNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQETMDSGFNQMQNSSVVGNRFPGYLEYPGVGSRQQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAGIPGHHEGMVNNNVDNNNFFGDDSNIIENDAVSTSNVVKFEVQLYKAREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1984 519 PANTHER SERINE/THREONINE KINASE 17 518 - -
Gso8g1984 519 CDD AMPKA_C 394 516 - -
Gso8g1984 519 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 301 341 IPR015940 -
Gso8g1984 519 Pfam Kinase associated domain 1 476 518 IPR001772 -
Gso8g1984 519 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 470 518 IPR001772 -
Gso8g1984 519 SUPERFAMILY KA1-like 337 518 IPR028375 -
Gso8g1984 519 ProSiteProfiles Protein kinase domain profile. 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1984 519 Pfam Protein kinase domain 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1984 519 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 17 518 - -
Gso8g1984 519 CDD STKc_AMPK_alpha 25 280 - -
Gso8g1984 519 CDD UBA_SnRK1_plant 302 342 - -
Gso8g1984 519 Pfam UBA/TS-N domain 302 338 IPR015940 -
Gso8g1984 519 SUPERFAMILY Protein kinase-like (PK-like) 25 294 IPR011009 -
Gso8g1984 519 SMART uba_6 303 340 IPR015940 -
Gso8g1984 519 Gene3D Kinase associated domain 1, KA1 400 517 - -
Gso8g1984 519 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Gso8g1984 519 Gene3D Transferase(Phosphotransferase) domain 1 20 358 - -
Gso8g1984 519 SMART serkin_6 28 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1984 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1984 Gso-Chr8 20497744 20505691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1984 28 280 CBL-interacting serine-threonine protein kinases AT4G24400 51.969 4.87e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Gso8g1984 Pkinase 7.5e-81 CL0016