Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1981 ATGCAACCCACATCCGGCGGCGGCGGGCTGGCAAGGTTCCGTTCAGCTCCGGCGAGCTGGTTAGAATCAGTTCTGTTGAAGGAAGAGGAAGAAGAAGAAGACCCCTTAAGCTTCACTCAACTGCTTTCCACTATCGATGATGCTCCCTCTCATTCTCAACACCAACTCTATGGTACCGCTCTCTCAAACAAGGATAAAACACCTGAAATCTTCATGTTAGAAGATTCCGTTCCTTGCAGAGTGAGGGCTAAGCGTGGCTGTGCTACTCATCCCAGGAGTATTGCTGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTGCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGATATGTTAGATGAGGCTGTAGCGTATGTCAAGTTTCTACAAAAGCAAATTGAGGAACTGTCAGAGCACCAACGGAGGTGTAAATGCGTGGTTCAAGAGTAA 474 0.4768 MQPTSGGGGLARFRSAPASWLESVLLKEEEEEEDPLSFTQLLSTIDDAPSHSQHQLYGTALSNKDKTPEIFMLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIEELSEHQRRCKCVVQE* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1981 157 SMART finulus 93 143 IPR011598 GO:0046983
Gso8g1981 157 Pfam Helix-loop-helix DNA-binding domain 92 138 IPR011598 GO:0046983
Gso8g1981 157 CDD bHLH_AtbHLH_like 92 145 IPR045239 -
Gso8g1981 157 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 64 151 - -
Gso8g1981 157 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 137 IPR011598 GO:0046983
Gso8g1981 157 Gene3D - 88 157 IPR036638 GO:0046983
Gso8g1981 157 Coils Coil 127 157 - -
Gso8g1981 157 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 64 151 - -
Gso8g1981 157 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 154 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1981 Gso-Chr8 20460902 20463792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1981 72 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 81.395 1.98e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g1981 HLH 8.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1981 - - gmx:100527723 284.263