Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1972 ATGGCATCCAATAATCCTTACGAGATAATGGACGATGAGGGATTTGACTGGGAAGCAGCTGCTAGAGAAATCGACGTGGTTTGCCAGACGACCAGTGACGTAAAGGGAAAGGGAAGGGTTTTTGAGAAGAGAAAGCAGCAATCCACTCTCGATAAGTTCATATCTATTGCCAATGCCAATGCCGAAAAGGAAACCCCACCACCGCAGTTCCAAGAAGATGACCAAAGCCCTGCTTTCATCCACCACATTGACACCGAGGCTGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGTGACTATCAATTTGATATTACCCAGTCCGCACTTTTCTCAAACACATTGGTGGCCTTGCCAACGGGACTTGGCAAAACCCTCATTGCCGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTTGTCATGCAGCAGATAGAAGCATGCCACAATATTGTGGGAATACCTCAAGAATGGACAGTTGATATGACTGGTCAGCTAAGTCCTCCCAAAAGAGCTCAATTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAGGATATTCATTCTGGTACATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACGCTTATTGTGAAGCTGTTCGCGAGTTAATGTCTGTACCAGTACAGCTGAGAATATTAGCGTTAACTGCAACGCCAGGATCAAAGCAACAGACAGTCCAAGCTGTCATTGATAATTTGCATATCTCCAGACTTGAATATCGCAGTGAAACTGACCATGATGTTATCTCATATGTTCACAGTAGGAAGATAGAATTGATACAGGTTGCAATGGGCCCAGAAGCGGTAGAAATAAACAATAAGTTTATGGAAGTAATACGCCCTATAGTAGCCAGGCTTACAAATATTGGGGTCATTCAGAACAGAGATTACCGCACTTTGAGCCCTTGTCAATTACTTGAAATAAGGGAAAAGTTTCGCCAACGGCCTAGGCAAGATCTTTCTCATATCAACTATGAAGATGTTGAAGGGTATTTTGGCGTTCTCATTACTCTTTATTACATCCATAAGTTGCTCTCAAGTCACGGAATAAGGCCAGCACATGAGATGCTTGAGAGAAAATTGAAGCAAGGATATTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTGAAAGCAAGGCAGCTAATGCAGCAAAGTTTGTCTCACGGAGCATCTAGTCCAAAATTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACTAATGATCCGCAAAACTCCAGGGTAATTATCTTCTCCAATTACAGAGAAAGTGTCAGGGATATAATGAATGCACTTGGAGATATTGGGGAATTAGTCAAAGCTACTGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGCGCCTATAATGTTATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTCAGAATGATCCAGCGAATGGGGAGAACAGGAAGAAAGCATGATGGACGAGTCGTAGTTTTTGCTTGTGAAGGGACAGAGTTGAAGGGCTACTTGCAAAAACAGGCAAAGAGCAAGACTATAAGTAAACACATGCGAAATGGGGGCATAAATAGCTTTACCTTTCATCCTAGTCCAAGGATGATTCCTCATGTCCTTAAACCAGAAGTTAAATGCGTTGAGCTGTCCATTGAGAAATTTATTCCTCGTCCAAAGAATGTGAAAGATGATGAGCTCCACATTTCTCCATCAAAGGACAAACTAACTGTTGCGGAAATTGATTTACTTGAAACATATTTTCACCCTACTGTGGAAAACAATAGTAGAATGTCTCTTATTGCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCCTCTGGAACATTGATGCTTATAGACATGATGCAGCGCTTGCAAGGACTAGTATCATTTCCAGAAGATGACAAAACTTCTTCACTTCAGGAAGATCTGTGTTTGGGACATGGTAAGCCAGTCACCACTACCGAACTTGATGAAGCTAAAAAGGACAATGAATCGTGCTCTAGGCATAAAATGAGAAGGAATTTAGTCTCTGTTAATTGTCTGGAGATGGATTCGTATCATTTGGGGATTCAAAGCAAAGACTTAGTTGACCTAACTCGACAAGATGGTACTTTCTGTGACTTGGGTAAGAATCAAGAGGAAGCATGTGAGGGTGATGAGACAATTCCTGAAACTCCAATTGCTAAGAGAAGTTTGTCAAATGAAGGAGATAATGATGGTCAAATGGTAAATCTTGTGGAGATTGAGACTTCTTCATTGGCTGCAAATGCATGCATTAATGGCATGAGAGATGAAGAACTTAGTCCACGTTTAACTAATTTGATTAGAAGTGGTGTTGTTCCAGAGTCTCCGGTTGACGAAAGAGGTGGGTGTCTTCAAGGGAAATCAAGATACAAGTCTATCATACGTGATTTTGTGTTACCTGTTCATCTCCACAAAGAACAGGATGTTAGTTCTTTAAGCTCTAGTGAAACTAAAGAGGTCATTATTGATAAGGGCACCAACAAGAATGTCTGTACTTCCCCCATTAATGAAACTCAAAGCCCTTTACTTGACCTGAAAAATTGTGCAATTAGAAGAGGACGAGTCTTCCTTTCTCAAATTGAGGAAGGCCATGCACATAACACTGATCCAAGCTTCAGCGAAGAAGCATATCCAGCAGATTGTGGTGAAATGTCCGAAAGCATTAAACCTGCACGCAAATTTAAAAGGTTGCGGAAAGCTGAAGATACTGAAAGAAATATGAATCAGAAAAACAATAAACTTTTTGCTTCAACAGCAAACTTTCTCAAACCATCTTCTGCCTCCAATCCTGCACAATATAAGCATGGCCAAGGTAAAAGGAAATCAACACACAATGTGAGAGACTTCATTGAGGAGGAAGCCGAAGTATCTTCAGATGGCTATGTATCTAATGATGAAGATGATGAGGAAGGCAGTTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAACACCAAGTAATGGAGGGCTTGATCTTTGTGCCACCTTTACTCCTGACCGTGTGACTATGGCAGCCAGTATTAGTGAAAGTGAGGATTCTACAGGGAAGACAGTGGATCACTTCCACGCAGAGCCAACCAAACAGTCAGCAAATCGGACTTTGGAATCTGTTAGTATCAACCAGATAACCTCAGAAGCAGTGGCTTCAACTTGTTATCCTATGGGAACTGGGACAGAGACAAGAAGTCACAAACGAAGATTGGCATTTTACCATTCTGGACACTTCCCAAATATGAACCTTCAACGAGAATTTGAACTTCAATCAAAGAAAGACGTAGTGCACACTGATGCAACTACAGATGTTCTATGTGATGATCAATTTTATAATGATCTTGATCTTGACGAGTTGGAGGCACAAGCAACATTGCTTCTAAAACAGAAATTAGATTTGTCTAATCAGAAACAAGATACGGTCCCTCAATCTCACACATCCAATCTTGATATTTTTCAGTCTCCATCATTTGACCTTGGGATATGA 3801 0.4088 MASNNPYEIMDDEGFDWEAAAREIDVVCQTTSDVKGKGRVFEKRKQQSTLDKFISIANANAEKETPPPQFQEDDQSPAFIHHIDTEAAKTWIYPVNVPLRDYQFDITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRAQFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRELMSVPVQLRILALTATPGSKQQTVQAVIDNLHISRLEYRSETDHDVISYVHSRKIELIQVAMGPEAVEINNKFMEVIRPIVARLTNIGVIQNRDYRTLSPCQLLEIREKFRQRPRQDLSHINYEDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGYFAKFMSKNEVILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMNALGDIGELVKATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVFACEGTELKGYLQKQAKSKTISKHMRNGGINSFTFHPSPRMIPHVLKPEVKCVELSIEKFIPRPKNVKDDELHISPSKDKLTVAEIDLLETYFHPTVENNSRMSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLVSFPEDDKTSSLQEDLCLGHGKPVTTTELDEAKKDNESCSRHKMRRNLVSVNCLEMDSYHLGIQSKDLVDLTRQDGTFCDLGKNQEEACEGDETIPETPIAKRSLSNEGDNDGQMVNLVEIETSSLAANACINGMRDEELSPRLTNLIRSGVVPESPVDERGGCLQGKSRYKSIIRDFVLPVHLHKEQDVSSLSSSETKEVIIDKGTNKNVCTSPINETQSPLLDLKNCAIRRGRVFLSQIEEGHAHNTDPSFSEEAYPADCGEMSESIKPARKFKRLRKAEDTERNMNQKNNKLFASTANFLKPSSASNPAQYKHGQGKRKSTHNVRDFIEEEAEVSSDGYVSNDEDDEEGSSFDSFIDDRTNPTAASQPEASRMDMMAIYRRSLLSQTPSNGGLDLCATFTPDRVTMAASISESEDSTGKTVDHFHAEPTKQSANRTLESVSINQITSEAVASTCYPMGTGTETRSHKRRLAFYHSGHFPNMNLQREFELQSKKDVVHTDATTDVLCDDQFYNDLDLDELEAQATLLLKQKLDLSNQKQDTVPQSHTSNLDIFQSPSFDLGI* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1972 1266 Gene3D - 95 289 IPR027417 -
Gso8g1972 1266 CDD FANCM_ID 306 420 - -
Gso8g1972 1266 CDD DEXDc_FANCM 97 278 IPR044749 GO:0005524
Gso8g1972 1266 MobiDBLite consensus disorder prediction 1041 1057 - -
Gso8g1972 1266 PANTHER FANCONI ANEMIA GROUP M PROTEIN 782 1231 IPR039686 GO:0006281|GO:0043138
Gso8g1972 1266 PANTHER FANCONI ANEMIA GROUP M PROTEIN 14 741 IPR039686 GO:0006281|GO:0043138
Gso8g1972 1266 SMART helicmild6 462 556 IPR001650 -
Gso8g1972 1266 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 782 1231 - -
Gso8g1972 1266 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 14 741 - -
Gso8g1972 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 414 IPR027417 -
Gso8g1972 1266 SMART ultradead3 95 295 IPR014001 -
Gso8g1972 1266 Coils Coil 1221 1241 - -
Gso8g1972 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 569 IPR027417 -
Gso8g1972 1266 Pfam Helicase conserved C-terminal domain 439 555 IPR001650 -
Gso8g1972 1266 Pfam Type III restriction enzyme, res subunit 112 256 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gso8g1972 1266 CDD SF2_C_FANCM_Hef 430 562 - -
Gso8g1972 1266 MobiDBLite consensus disorder prediction 1007 1074 - -
Gso8g1972 1266 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 432 596 IPR001650 -
Gso8g1972 1266 Gene3D hef helicase domain 303 424 - -
Gso8g1972 1266 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 274 IPR014001 -
Gso8g1972 1266 Gene3D - 425 590 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1972 Gso-Chr8 20325943 20353317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1972 405 554 Eukaryotic Initiation Factors Gene Family AT3G13920 27.632 1.82e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1972 K10896 - gmx:100820078 2144.01