Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1966 ATGGGTTCTTTTGATTTTGCCCTGAAACCTCTGTTTCTGATTCAAAATTCGTTCTTTTTTAATTTTCAATCTTTCCGTTTTTCAACTTCAGCAAACACAAAGACAAGGTTTTTCCTTTTTCATCAGGGCAACTGCTGTACAATTAAGTTGCACTTTGTTGGAAAAAGAGAAAATAGAAAAAATGTCATGATGGAACAATCGGGGTTCTACAAACAGTTTCAATGCAATACCATGGAACCTAGGAATGAAGAGTTCCAGTCTGGATCTCAATCAGTAATTCAGGACCATATGGATGGCATGCATACTATCAGAAGACCGCCTGACTATAGCATGTCAGATTTTAAACCAGTACTTAATTATTCAATACAGACAGGTGAGGAATTTGCTCTTGAATTCATGCGCGATAGGGTGAATCTCAGGAAGCCCGTATTTTCAAATGTTAGTGATTCCAATTCCAATTACGCAACTGGTTGTATGGAACTGAAAGGCGTCTTAGGAATCAGTCAAGCACCTTCTGAAAGTGGGTCTGACATTTCTATGCTTTCGAAAGCCGAGAAAGGTTCAACAGAGTTTAACAGACAGAGTACTTCATTACATGGAGACAGAAGCAATTATGGGTCAATTAGATCAATACCAAGAACTTCATTGAATCAGGAGAATAGTCGATTTGTACATGGGTATGGCTCTTCTGTTGGTTCTGACAGCTCATCAACAATGATGAAGTGTCTCTGTAGCTTTGGTGGAAGAATATTACCACGACCAAGTGATGGAAAGCTAAGGTATGTTGGAGGTCAAACTCGTATTATTCGTCTAAGAAAGGACATATCTTGGCAGGAGCTCATGCAGAAAGCATTACTAATCTATAATCTGGTTCATGTACTAAAATATCAACTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTATCCTCTGAAGAGGATTTGCAGAATATGATGGAGGAATGTAATCTTCTAGAAGATAGAGAACGCTCACAAAAGCTTAGGTTGTTTTTGTTCTCATTGAGTGATTTAGAAGATGCTCAGTTTGCTCTCGGTAGCATAGGTGGTGATTCTCAGGTCCAATATGTTCTTGCTGTTAATGCCATGGACTTTGGATCGATAAACAGCTCAACCCCACTAGGTGTCAGTTTTTCAGCAGATGATCTACATGAATTGGAAAGGCAAACTGCGGAGAGGGAAACTTGTAGAGTTACTGTAGAATCTATAGGTGTCAGCAATGCTCCCTTGAGTAATAAATCTGACTCTTCATTGACTATTCATTCTTCACAACCAGTTCTACCAAATGCCTCTAATGCTTATGAAATCAATCGACTGTCTTATGGTGATCAAATGACACAAGTTTGGGATTATAGTCGTCAATATTTTGTTCATCATGGCCTTACTTCCAGTCATAACCCTGTTGTTGGAGAGACTCCTGTTCCTATGGCTCCTCATCTGCTGAACAATCAACAAGGGGTTCTGAATGAAGATAATCTACCTTGTGGATTACAAGTACAAAATTCTCAGTTATCTACAATGCAGGTAAAAAAGATAAGCGATAGTTCAGTTAAACAAGGGAGTGACCCTGGTAAAGTTTTATCCTCAGAAACCCCATCCCCTGCTATCTCACAGCCCTTTGATAGTTGCTTGAAAAGTAATTTTCCTGAAGCATCGGTTGTAGTTACCATGCCTGAGGGGCATCCACCTTCATTGCCTTCAACAAAAAAGGTTCAGCACAAGGATTATGAAGAGGCCTCTTTTACTTCTAGCAGTACATTTGTTCCTTCTTATGTTGATTCCCACACCAATGCAATTGATTTGAGTTGTCTTCATCCTCCTCCACTTCCTGAGAGAGTTTACTATTCAGAAAGAACTCCGAGGGAGCAAGTGGAGTTGCTGAATCGTTCCTCCAAGTCAGATGACACTCACAGTTCTCAAATTCATGTGTCAGATATACTTTCTGATGTCAACCCAGAGGGTCTAACAGAATCTGGTGACAACTTGCATGATGGTAAAATGTTGAATCCAACTGAGGAATTGGGTATTGTGACAAAGCCCTTGCTTGCAGATGGCCATACCATTGACAATGGGTTATCCAAAAATCTAATGAGCAAACCGTTGCCTGATACAAACAGTCTGGTTAAGTCCAAACTTTCTGAGCACACAGATCCTGAGTTGAAGTCAGTGTTGCCCAGCAATGAAGGAACTAAAGATGTTGAAACTGAAAATTATTGTAAAGATAACAACACCAAGCTCTTGGTTGATGAAACCGAAACCAAAGATGGTAAATCAGATCTTCCTGCTTTTCATCATGTTTCGTCTGGTAAGCATCTTGATGATCTAGCATCCAATCTTCCTGAGATTGATTGGGGTGAAGCCTCAGGGAAGGAATCTTGTGATGGCTGTATGGTACAAGAACTACCTGTATTTGTAACTGGGAACATAACCAAAGATGTTTATCAAGATTTCCCTCCAAATGTTGTTTCTGAACAATCTCAAGGTGACATTCTTATTGATATTGATGATCGATTTCCTCGGGAAATACTTTCTGATATGTTTTCTAAAGCAATACTTGGAGAAGATCCCTCCAGTCTACATCCACCGCCTGGAGATGGAGTAGGCTTAAGCATAAATATGGAAAATCATGAACCTAAAAGATGGTCATATTTTCACAAGTTAGCACAAGAAGGGCTTGATAATGTCTCTCTAATTGATCAGGATCATCTTGGTTTTTCACCCGTGATAGTAAAAGCAGGAGATAATAGAACGCATCATGTTACGCCACTAACAACTGATGGACATCCTCTACATCATGAAGATTCCCATCTCAATTTCAATGAAGAAAATCAAGAGGACTTGCATAGAATGATTGCAACTGAAACCACTGTTCTGAAGTCCTATTATAATCAATCCCAACTTAAGGAAAACGAGAGTATGCAGTTTCATGCTATGATGGAAAATCTAAGAATGCAAGAGTCAGAGTTTGAGGATGGCAAATTTGATGCAAATAGCAATCTACCTCCACTTGATCCTTCTTTCGGAGATTTGAGTACTGTGCAGGTCATTAAGAATGAAGATCTTGAAGAGCTGCGAGAACTAGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAGTGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTAGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTGGTACAGCATGGGCCAGGAGGAACAATGGCCACTGTGGCAGAATATATGGTGGATGGTTCTCTTAGGCATGTATTACTTTGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTAGTAAACTTGAAAGATCCTTTACGTCCAATATGCAAGGTTGGTGATTTTGGCTTATCAAAAATTAAACGCAATACCTTGGTTACTGGTGGTGTGCGTGGGACTCTACCTTGGATGGCACCAGAGCTGCTGAATGGAAGCAGCAACAAGGTCTCTGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTATTATGGGAAATTCTGACGGGTGAGGAGCCATATGCTAATATGCACTATGGTGCAATTATAGGTGGGATTGTAAATAACACATTAAGGCCAATCATCCCAAGCAACTGTGATCATGAATGGAGAGCACTAATGGAACAATGTTGGGCACCCAATCCTGCAGCCAGACCATCCTTCACAGAAATTGCCAGTCGTTTGCGCATAATGTCTGCAGCAGCAGCTAGCCAAACCAAAACACAGGGCAATAAAGCATCTAAATGA 3933 0.4033 MGSFDFALKPLFLIQNSFFFNFQSFRFSTSANTKTRFFLFHQGNCCTIKLHFVGKRENRKNVMMEQSGFYKQFQCNTMEPRNEEFQSGSQSVIQDHMDGMHTIRRPPDYSMSDFKPVLNYSIQTGEEFALEFMRDRVNLRKPVFSNVSDSNSNYATGCMELKGVLGISQAPSESGSDISMLSKAEKGSTEFNRQSTSLHGDRSNYGSIRSIPRTSLNQENSRFVHGYGSSVGSDSSSTMMKCLCSFGGRILPRPSDGKLRYVGGQTRIIRLRKDISWQELMQKALLIYNLVHVLKYQLPGEDLDALVSVSSEEDLQNMMEECNLLEDRERSQKLRLFLFSLSDLEDAQFALGSIGGDSQVQYVLAVNAMDFGSINSSTPLGVSFSADDLHELERQTAERETCRVTVESIGVSNAPLSNKSDSSLTIHSSQPVLPNASNAYEINRLSYGDQMTQVWDYSRQYFVHHGLTSSHNPVVGETPVPMAPHLLNNQQGVLNEDNLPCGLQVQNSQLSTMQVKKISDSSVKQGSDPGKVLSSETPSPAISQPFDSCLKSNFPEASVVVTMPEGHPPSLPSTKKVQHKDYEEASFTSSSTFVPSYVDSHTNAIDLSCLHPPPLPERVYYSERTPREQVELLNRSSKSDDTHSSQIHVSDILSDVNPEGLTESGDNLHDGKMLNPTEELGIVTKPLLADGHTIDNGLSKNLMSKPLPDTNSLVKSKLSEHTDPELKSVLPSNEGTKDVETENYCKDNNTKLLVDETETKDGKSDLPAFHHVSSGKHLDDLASNLPEIDWGEASGKESCDGCMVQELPVFVTGNITKDVYQDFPPNVVSEQSQGDILIDIDDRFPREILSDMFSKAILGEDPSSLHPPPGDGVGLSINMENHEPKRWSYFHKLAQEGLDNVSLIDQDHLGFSPVIVKAGDNRTHHVTPLTTDGHPLHHEDSHLNFNEENQEDLHRMIATETTVLKSYYNQSQLKENESMQFHAMMENLRMQESEFEDGKFDANSNLPPLDPSFGDLSTVQVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVAEYMVDGSLRHVLLCKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPIIPSNCDHEWRALMEQCWAPNPAARPSFTEIASRLRIMSAAAASQTKTQGNKASK* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1966 1310 MobiDBLite consensus disorder prediction 517 540 - -
Gso8g1966 1310 Gene3D Phosphorylase Kinase; domain 1 1020 1114 - -
Gso8g1966 1310 PRINTS Tyrosine kinase catalytic domain signature 1109 1122 IPR001245 GO:0004672|GO:0006468
Gso8g1966 1310 PRINTS Tyrosine kinase catalytic domain signature 1146 1164 IPR001245 GO:0004672|GO:0006468
Gso8g1966 1310 PRINTS Tyrosine kinase catalytic domain signature 1217 1239 IPR001245 GO:0004672|GO:0006468
Gso8g1966 1310 PRINTS Tyrosine kinase catalytic domain signature 1261 1283 IPR001245 GO:0004672|GO:0006468
Gso8g1966 1310 SMART serkin_6 1027 1293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1966 1310 SUPERFAMILY CAD & PB1 domains 255 343 - -
Gso8g1966 1310 PANTHER - 159 1310 - -
Gso8g1966 1310 Gene3D Transferase(Phosphotransferase) domain 1 1115 1310 - -
Gso8g1966 1310 Pfam Protein tyrosine and serine/threonine kinase 1028 1290 IPR001245 GO:0004672|GO:0006468
Gso8g1966 1310 SMART PB1_new 254 341 IPR000270 GO:0005515
Gso8g1966 1310 CDD STKc_MAP3K-like 1033 1290 - -
Gso8g1966 1310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1152 1164 IPR008271 GO:0004672|GO:0006468
Gso8g1966 1310 PANTHER SERINE-THREONINE PROTEIN KINASE 159 1310 - -
Gso8g1966 1310 Coils Coil 308 328 - -
Gso8g1966 1310 SUPERFAMILY Protein kinase-like (PK-like) 1017 1290 IPR011009 -
Gso8g1966 1310 Gene3D - 258 340 - -
Gso8g1966 1310 ProSiteProfiles Protein kinase domain profile. 1027 1292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g1966 1310 MobiDBLite consensus disorder prediction 719 740 - -
Gso8g1966 1310 ProSitePatterns Protein kinases ATP-binding region signature. 1033 1058 IPR017441 GO:0005524
Gso8g1966 1310 Pfam PB1 domain 256 340 IPR000270 GO:0005515
Gso8g1966 1310 CDD PB1_UP2 243 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1966 Gso-Chr8 20160947 20171485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1966 112 650 MAP Kinase Kinase Kinase AT1G16270 37.582 2.22e-77 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gso8g1966 PK_Tyr_Ser-Thr 2.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1966 - - gmx:100817937 2614.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1966 8 20160947 20171485 Gso8g1966 8 20160947 20171485 ECH